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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS13345 and ABIE40_RS13350 are separated by 45 nucleotides
ABIE40_RS13350 and ABIE40_RS13355 are separated by 160 nucleotides
ABIE40_RS13355 and ABIE40_RS13360 are separated by 99 nucleotides
ABIE40_RS13360 and ABIE40_RS13365 are separated by 48 nucleotides
ABIE40_RS13345: ABIE40_RS13345 - hypothetical protein, at 2,602,169 to 2,602,402
_RS13345
ABIE40_RS13350: ABIE40_RS13350 - ATP-dependent Clp protease proteolytic subunit, at 2,602,448 to 2,603,032
_RS13350
ABIE40_RS13355: ABIE40_RS13355 - hypothetical protein, at 2,603,193 to 2,603,912
_RS13355
ABIE40_RS13360: ABIE40_RS13360 - DUF2076 domain-containing protein, at 2,604,012 to 2,604,800
_RS13360
ABIE40_RS13365: ABIE40_RS13365 - preQ(1) synthase, at 2,604,849 to 2,605,313
_RS13365
Group
Condition
ABIE40
_RS13345
ABIE40
_RS13350
ABIE40
_RS13355
ABIE40
_RS13360
ABIE40
_RS13365
carbon source
Fumarate (C)
N.D.
-0.6
-0.4
-0.1
-0.5
carbon source
L-Arabinose (C)
N.D.
-0.9
-0.1
-0.1
+0.3
carbon source
pyruvate (C)
N.D.
-0.5
+0.1
-0.2
-0.0
carbon source
D-Lactate (C)
N.D.
+0.3
+0.1
-0.4
-0.6
r2a no stress control
R2A no stress control
N.D.
-0.6
+0.1
-0.1
+0.1
carbon source
casaminos (C)
N.D.
-0.4
-0.0
+0.2
-0.2
dmso control
DMSO control
N.D.
-0.6
+0.3
-0.2
+0.1
carbon source
L-Lysine (C)
N.D.
-0.5
-0.0
+0.2
+0.1
carbon source
D-Fructose (C)
N.D.
+0.4
-0.4
-0.2
+0.0
carbon source
Thymidine (C)
N.D.
-0.3
+0.0
-0.3
+0.3
carbon source
Formate (C)
N.D.
+0.2
+0.1
-0.3
-0.2
dmso control
DMSO control
N.D.
-0.3
-0.0
-0.2
+0.4
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.4
-0.1
+0.2
+0.2
carbon source
L-Tryptophan (C)
N.D.
-0.2
+0.3
-0.4
+0.2
carbon source
L-Asparagine (C)
N.D.
-0.4
+0.1
-0.1
+0.3
carbon source
L-Glutamine (C)
N.D.
-0.1
+0.1
-0.3
+0.4
carbon source
Ethanol (C)
N.D.
+0.1
-0.3
-0.0
+0.4
stress
R2A with 3-octanone 5.3129 mM
N.D.
-0.2
+0.3
-0.2
+0.3
carbon source
L-Alanine (C)
N.D.
+0.3
-0.2
-0.1
+0.2
carbon source
L-Tryptophan (C)
N.D.
+0.3
-0.1
-0.2
+0.3
stress
R2A with 1-octen-3-ol 1.3568235 mM
N.D.
-0.2
+0.3
-0.0
+0.3
carbon source
D-Glucose-6-Phosphate (C)
N.D.
-0.2
+0.3
-0.2
+0.5
carbon source
L-Alanine (C)
N.D.
+0.1
+0.2
-0.4
+0.4
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
N.D.
+0.2
+0.4
-0.2
+0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
N.D.
+0.1
+0.2
-0.2
+0.5
carbon source
Glycolic Acid (C)
N.D.
+0.2
+0.2
-0.2
+0.3
stress
R2A with 3-octanone 5.3129 mM
N.D.
+0.3
+0.3
-0.3
+0.2
stress
R2A with 3-octanone 10.6206 mM
N.D.
+0.1
+0.4
-0.0
+0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
N.D.
+0.2
+0.3
+0.1
+0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
N.D.
+0.3
+0.2
+0.2
+0.3
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