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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS12620 and ABIE40_RS12625 are separated by 136 nucleotides
ABIE40_RS12625 and ABIE40_RS12630 are separated by 147 nucleotides
ABIE40_RS12630 and ABIE40_RS12635 overlap by 4 nucleotides
ABIE40_RS12635 and ABIE40_RS12640 are separated by 314 nucleotides
ABIE40_RS12620: ABIE40_RS12620 - molybdopterin-binding protein, at 2,459,794 to 2,460,003
_RS12620
ABIE40_RS12625: ABIE40_RS12625 - NUDIX domain-containing protein, at 2,460,140 to 2,460,856
_RS12625
ABIE40_RS12630: ABIE40_RS12630 - GntR family transcriptional regulator, at 2,461,004 to 2,461,639
_RS12630
ABIE40_RS12635: ABIE40_RS12635 - DUF2325 domain-containing protein, at 2,461,636 to 2,462,820
_RS12635
ABIE40_RS12640: ABIE40_RS12640 - hypothetical protein, at 2,463,135 to 2,463,389
_RS12640
Group
Condition
ABIE40
_RS12620
ABIE40
_RS12625
ABIE40
_RS12630
ABIE40
_RS12635
ABIE40
_RS12640
stress
R2A with 3-octanone 10.6206 mM
-0.3
-0.1
-0.8
+0.1
-0.7
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.1
+0.1
+0.1
+0.1
-1.5
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.2
-0.1
+0.2
+0.2
-1.3
stress
R2A with 3-octanone 10.6206 mM
+0.1
-0.3
-0.6
+0.5
-0.3
dmso control
DMSO control
+0.2
+0.0
+0.2
+0.2
-1.0
stress
R2A with 3-octanone 10.6206 mM
+0.4
-0.4
-0.2
+0.3
-0.4
stress
R2A with 3-octanone 15.9309 mM
+0.0
-0.4
+0.2
+0.4
-0.6
carbon source
Fumarate (C)
-0.1
-0.4
+1.0
+0.1
-0.9
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.0
-0.2
+0.3
+0.3
-0.7
carbon source
D-Serine (C)
+0.5
-0.4
-0.0
+0.3
-0.4
carbon source
5-Keto-D-Gluconic Acid potassium salt (C)
+0.4
-0.3
+0.3
+0.1
-0.6
stress
R2A with 3-octanone 15.9309 mM
+0.6
+0.1
+0.0
+0.1
-0.8
carbon source
L-Asparagine (C)
+0.3
-0.2
+0.6
-0.0
-0.5
carbon source
D-Raffinose (C)
+0.3
+0.2
+0.3
+0.1
-0.6
carbon source
D-Galactose (C)
+0.9
-0.4
+0.2
-0.0
-0.3
carbon source
L-Tryptophan (C)
+0.1
-0.4
-0.1
+0.1
+0.9
carbon source
L-Aspartic Acid (C)
+0.9
+0.3
+0.4
-0.2
-0.7
carbon source
L-Leucine (C)
+0.4
-0.3
+0.7
-0.0
+0.2
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.7
+0.2
-0.5
+0.3
+0.2
carbon source
L-Citrulline (C)
+0.6
+0.2
+0.7
-0.0
-0.5
carbon source
L-Lysine (C)
+1.0
+0.1
+0.3
+0.1
-0.3
carbon source
D-Lactate (C)
-0.1
-0.4
+0.4
+0.2
+1.2
carbon source
L-Methionine (C)
+0.6
-0.3
+0.8
+0.1
+0.1
carbon source
succinate (C)
+1.1
+0.0
-0.3
+0.1
+0.5
carbon source
Glycolic Acid (C)
+0.9
+0.2
+0.1
-0.1
+0.3
carbon source
L-Methionine (C)
+0.5
-0.2
+0.5
+0.0
+0.5
carbon source
D-Glucuronic Acid (C)
+0.5
-0.2
+0.6
-0.1
+0.7
carbon source
L-Glutamine (C)
+0.4
-0.1
+0.6
+0.1
+0.5
carbon source
L-Alanine (C)
+0.2
-0.1
+0.7
+0.0
+0.8
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.2
+0.3
+1.0
+0.3
+0.7
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