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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS12585 and ABIE40_RS12590 are separated by 41 nucleotides
ABIE40_RS12590 and ABIE40_RS12595 are separated by 3 nucleotides
ABIE40_RS12595 and ABIE40_RS12600 are separated by 152 nucleotides
ABIE40_RS12600 and ABIE40_RS12605 are separated by 23 nucleotides
ABIE40_RS12585: ABIE40_RS12585 - DUF2188 domain-containing protein, at 2,455,133 to 2,455,384
_RS12585
ABIE40_RS12590: ABIE40_RS12590 - hypothetical protein, at 2,455,426 to 2,455,758
_RS12590
ABIE40_RS12595: ABIE40_RS12595 - GAF domain-containing protein, at 2,455,762 to 2,456,250
_RS12595
ABIE40_RS12600: ABIE40_RS12600 - iron ABC transporter substrate-binding protein, at 2,456,403 to 2,457,437
_RS12600
ABIE40_RS12605: ABIE40_RS12605 - iron ABC transporter permease, at 2,457,461 to 2,458,471
_RS12605
Group
Condition
ABIE40
_RS12585
ABIE40
_RS12590
ABIE40
_RS12595
ABIE40
_RS12600
ABIE40
_RS12605
stress
R2A with 3-octanone 10.6206 mM
-0.2
-0.3
-0.4
-0.3
-0.2
carbon source
casaminos (C)
+0.6
-1.0
+0.3
-0.8
-0.2
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.2
-1.0
-0.3
+0.2
-0.1
dmso control
DMSO control
+0.3
-0.9
-0.4
+0.1
-0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.2
-0.6
-0.3
+0.2
-0.2
carbon source
L-Lysine (C)
+0.3
-0.6
-0.1
+0.1
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.5
-0.4
+0.0
-0.1
-0.4
r2a no stress control
R2A no stress control
+0.1
-0.6
-0.2
+0.2
+0.1
stress
R2A with 3-octanone 5.3129 mM
+0.3
+0.3
-0.5
-0.2
-0.2
stress
R2A with 3-octanone 10.6206 mM
+0.5
-0.4
-0.3
-0.1
+0.2
carbon source
Ethanol (C)
+0.7
-0.4
-0.2
-0.2
-0.1
r2a no stress control
R2A no stress control
+0.2
-0.3
-0.4
+0.1
+0.2
carbon source
succinate (C)
+0.4
-0.4
-0.1
+0.2
-0.1
carbon source
L-Tryptophan (C)
+0.4
-0.3
+0.3
-0.0
-0.3
carbon source
Thymidine (C)
+0.7
+0.0
-0.3
-0.1
-0.1
carbon source
Glycolic Acid (C)
+0.5
-0.4
-0.0
-0.1
+0.3
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.9
-0.3
-0.1
+0.1
-0.3
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.1
+0.7
-0.2
-0.2
+0.1
carbon source
Adenine (C)
+0.8
-0.4
-0.1
+0.0
+0.0
carbon source
water (C)
+1.0
-0.3
-0.1
-0.1
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.8
+0.1
+0.1
-0.2
-0.3
carbon source
Gelatin (C)
+1.3
-0.5
-0.4
+0.0
+0.0
carbon source
Carnitine Hydrochloride (C)
+0.7
-0.4
+0.2
+0.2
-0.1
carbon source
Fumarate (C)
+0.6
-0.5
+0.4
+0.1
-0.0
carbon source
D-Glucose (C)
+0.5
+0.3
+0.1
+0.1
-0.2
carbon source
L-Lysine (C)
+1.0
-0.1
+0.3
+0.0
-0.2
carbon source
D-Glucuronic Acid (C)
+0.7
+0.1
+0.1
+0.2
-0.2
carbon source
Formate (C)
+1.0
+0.3
+0.1
-0.3
-0.1
carbon source
L-Asparagine (C)
+0.7
+0.4
-0.1
+0.1
-0.1
carbon source
D-Fructose (C)
+1.3
+0.4
-0.1
+0.0
-0.1
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