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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS09600 and ABIE40_RS09605 are separated by 136 nucleotides
ABIE40_RS09605 and ABIE40_RS09610 are separated by 84 nucleotides
ABIE40_RS09610 and ABIE40_RS09615 are separated by 35 nucleotides
ABIE40_RS09615 and ABIE40_RS09620 are separated by 221 nucleotides
ABIE40_RS09600: ABIE40_RS09600 - FecR family protein, at 1,853,500 to 1,854,021
_RS09600
ABIE40_RS09605: ABIE40_RS09605 - citrate synthase, at 1,854,158 to 1,855,294
_RS09605
ABIE40_RS09610: ABIE40_RS09610 - citrate synthase/methylcitrate synthase, at 1,855,379 to 1,856,467
_RS09610
ABIE40_RS09615: ABIE40_RS09615 - ABC transporter ATP-binding protein, at 1,856,503 to 1,858,341
_RS09615
ABIE40_RS09620: ABIE40_RS09620 - SRPBCC domain-containing protein, at 1,858,563 to 1,859,033
_RS09620
Group
Condition
ABIE40
_RS09600
ABIE40
_RS09605
ABIE40
_RS09610
ABIE40
_RS09615
ABIE40
_RS09620
carbon source
D-Lactate (C)
-1.0
+0.5
-0.3
-0.0
-0.4
stress
R2A with 3-octanone 5.3129 mM
-0.5
+0.1
+0.2
+0.1
-0.8
carbon source
Fumarate (C)
-0.6
-0.1
+0.5
+0.0
-0.6
carbon source
Gelatin (C)
-0.4
+0.3
+0.0
+0.1
-0.7
carbon source
L-Threonine (C)
+0.4
+0.2
+0.1
-0.1
-0.9
carbon source
L-Aspartic Acid (C)
+0.4
+0.3
-0.1
+0.1
-0.7
carbon source
water (C)
+0.3
+0.5
-0.3
+0.1
-0.6
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
+0.2
-0.1
+0.4
+0.3
-0.6
carbon source
casaminos (C)
+0.4
+0.3
-0.1
+0.1
-0.6
stress
R2A with 3-octanone 10.6206 mM
-1.2
+0.5
+0.8
+0.1
+0.1
carbon source
D-Glucuronic Acid (C)
+0.8
+0.2
+0.0
+0.1
-0.7
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.8
+0.1
+0.0
+0.1
-0.5
carbon source
Adenine (C)
+0.9
+0.1
+0.0
+0.0
-0.6
carbon source
Carnitine Hydrochloride (C)
+0.8
+0.1
+0.3
+0.2
-0.9
carbon source
D-Glucose-6-Phosphate (C)
+0.3
+0.3
+0.3
+0.2
-0.6
carbon source
pyruvate (C)
+0.6
+0.3
+0.2
+0.1
-0.6
carbon source
L-Asparagine (C)
+1.0
+0.0
+0.1
+0.1
-0.6
carbon source
D-Galactose (C)
+0.8
+0.3
+0.2
+0.1
-0.7
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.2
-0.3
+0.6
+0.2
+0.5
r2a no stress control
R2A no stress control
+0.6
+0.3
+0.3
+0.2
-0.5
carbon source
Thymidine (C)
+0.7
+0.3
+0.3
+0.2
-0.5
carbon source
D-Sorbitol (C)
+1.0
+0.3
+0.0
+0.0
-0.4
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+1.4
+0.0
+0.2
+0.1
-0.7
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.7
+0.4
+0.3
+0.3
-0.6
carbon source
Glycolic Acid (C)
+1.2
+0.4
-0.2
+0.1
-0.2
carbon source
Adenosine (C)
+1.2
+0.5
+0.2
+0.0
-0.5
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.7
+0.2
+0.2
+0.2
+0.2
stress
R2A with 1-octen-3-ol 1.3568235 mM
+1.0
+0.1
+0.3
+0.3
-0.0
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.9
+0.1
+0.4
+0.3
-0.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.7
+0.4
+0.1
-0.0
+0.5
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