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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS09555 and ABIE40_RS09560 overlap by 4 nucleotides
ABIE40_RS09560 and ABIE40_RS09565 overlap by 32 nucleotides
ABIE40_RS09565 and ABIE40_RS09570 overlap by 4 nucleotides
ABIE40_RS09570 and ABIE40_RS09575 are separated by 527 nucleotides
ABIE40_RS09555: ABIE40_RS09555 - cyclic pyranopterin monophosphate synthase MoaC, at 1,843,935 to 1,844,435
_RS09555
ABIE40_RS09560: ABIE40_RS09560 - gephyrin-like molybdotransferase Glp, at 1,844,432 to 1,845,658
_RS09560
ABIE40_RS09565: ABIE40_RS09565 - multidrug effflux MFS transporter, at 1,845,627 to 1,846,868
_RS09565
ABIE40_RS09570: ABIE40_RS09570 - MarR family transcriptional regulator, at 1,846,865 to 1,847,323
_RS09570
ABIE40_RS09575: ABIE40_RS09575 - hypothetical protein, at 1,847,851 to 1,848,039
_RS09575
Group
Condition
ABIE40
_RS09555
ABIE40
_RS09560
ABIE40
_RS09565
ABIE40
_RS09570
ABIE40
_RS09575
carbon source
L-Citrulline (C)
+0.1
-0.0
-0.3
-3.9
+0.3
carbon source
Thymidine (C)
+0.5
-0.4
+0.3
+0.7
-4.4
carbon source
D-Ribose (C)
-1.5
-1.3
+0.0
-0.0
+0.1
carbon source
D-Glucose-6-Phosphate (C)
-0.9
-1.1
-0.1
-0.1
-0.4
stress
R2A with 3-octanone 15.9309 mM
+0.2
+0.1
-0.2
-2.2
-0.3
carbon source
L-Aspartic Acid (C)
+0.1
-0.1
-0.1
+0.3
-1.6
carbon source
casaminos (C)
+0.5
-0.0
-0.2
-0.1
-1.5
carbon source
D-Raffinose (C)
-0.7
-0.2
+0.0
+0.7
-0.9
stress
R2A with 3-octanone 15.9309 mM
-0.1
-0.6
-0.3
-1.2
+1.2
stress
R2A with 3-octanone 10.6206 mM
+0.7
+0.2
+0.4
-2.0
+0.1
carbon source
Adenosine (C)
+0.2
-0.3
-0.1
-0.8
+0.6
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.2
-0.5
-0.3
-0.8
+0.9
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.3
-1.0
+0.2
-0.4
+1.2
stress
R2A with 3-octanone 5.3129 mM
+0.6
+0.3
-0.2
-1.0
+0.2
carbon source
Fumarate (C)
+0.5
-0.9
+0.2
-0.8
+1.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
-0.2
+0.0
-0.1
-0.8
+1.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.0
+0.4
+0.1
-1.2
+1.2
r2a no stress control
R2A no stress control
+0.5
+0.5
+0.1
-1.3
+0.8
dmso control
DMSO control
+0.8
-0.5
-0.1
-0.5
+1.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.8
+0.2
-0.2
-0.6
+0.8
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
+0.4
-0.1
+0.1
-0.5
+1.2
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.4
-0.5
+0.1
+0.5
+0.8
carbon source
4-Hydroxybenzoic Acid (C)
+0.8
+0.3
+0.0
+1.1
-0.9
carbon source
D-Serine (C)
+0.8
+0.7
-0.1
-0.4
+0.4
carbon source
D-Lactate (C)
-0.1
-0.1
-0.3
+1.3
+1.0
carbon source
casaminos (C)
+0.4
+0.9
-0.2
+0.6
+0.1
carbon source
Adenine (C)
+0.3
-0.3
+0.0
+0.5
+1.4
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.3
-0.1
+0.1
+0.6
+1.4
dmso control
DMSO control
+0.5
+0.3
+0.1
+0.6
+1.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.6
+0.5
-0.0
+0.7
+0.7
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