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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS08955 and ABIE40_RS08960 are separated by 2 nucleotides
ABIE40_RS08960 and ABIE40_RS08965 overlap by 4 nucleotides
ABIE40_RS08965 and ABIE40_RS08970 are separated by 32 nucleotides
ABIE40_RS08970 and ABIE40_RS08975 are separated by 399 nucleotides
ABIE40_RS08955: ABIE40_RS08955 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 1,724,410 to 1,725,228
_RS08955
ABIE40_RS08960: ABIE40_RS08960 - LpxI family protein, at 1,725,231 to 1,726,112
_RS08960
ABIE40_RS08965: ABIE40_RS08965 - lipid-A-disaccharide synthase, at 1,726,109 to 1,727,284
_RS08965
ABIE40_RS08970: ABIE40_RS08970 - citrate synthase, at 1,727,317 to 1,728,607
_RS08970
ABIE40_RS08975: ABIE40_RS08975 - ComEC/Rec2 family competence protein, at 1,729,007 to 1,731,325
_RS08975
Group
Condition
ABIE40
_RS08955
ABIE40
_RS08960
ABIE40
_RS08965
ABIE40
_RS08970
ABIE40
_RS08975
carbon source
D-Raffinose (C)
N.D.
N.D.
N.D.
-4.4
+0.3
carbon source
L-Methionine (C)
N.D.
N.D.
N.D.
-3.9
-0.1
carbon source
D-Raffinose (C)
N.D.
N.D.
N.D.
-3.8
-0.0
carbon source
D-Sorbitol (C)
N.D.
N.D.
N.D.
-3.7
+0.1
carbon source
L-Methionine (C)
N.D.
N.D.
N.D.
-3.7
+0.1
carbon source
L-Citrulline (C)
N.D.
N.D.
N.D.
-3.5
-0.0
carbon source
L-Arabinose (C)
N.D.
N.D.
N.D.
-3.7
+0.3
carbon source
L-Aspartic Acid (C)
N.D.
N.D.
N.D.
-3.2
-0.2
carbon source
D-Sorbitol (C)
N.D.
N.D.
N.D.
-3.4
+0.0
carbon source
casaminos (C)
N.D.
N.D.
N.D.
-3.2
-0.1
carbon source
L-Alanine (C)
N.D.
N.D.
N.D.
-3.4
+0.2
carbon source
casaminos (C)
N.D.
N.D.
N.D.
-3.4
+0.4
carbon source
L-Threonine (C)
N.D.
N.D.
N.D.
-2.7
-0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
N.D.
N.D.
N.D.
-3.1
+0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
N.D.
N.D.
N.D.
-2.9
+0.2
carbon source
L-Arabinose (C)
N.D.
N.D.
N.D.
-2.7
+0.1
carbon source
L-Citrulline (C)
N.D.
N.D.
N.D.
-2.5
-0.1
carbon source
Glycolic Acid (C)
N.D.
N.D.
N.D.
-2.7
+0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
N.D.
N.D.
N.D.
-2.7
+0.1
carbon source
D-Glucose-6-Phosphate (C)
N.D.
N.D.
N.D.
-2.4
-0.1
carbon source
Carnitine Hydrochloride (C)
N.D.
N.D.
N.D.
-2.3
-0.3
carbon source
D-Fructose (C)
N.D.
N.D.
N.D.
-2.4
-0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
N.D.
N.D.
N.D.
-2.5
+0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
N.D.
N.D.
N.D.
-2.7
+0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
N.D.
N.D.
N.D.
-2.4
+0.1
carbon source
L-Alanine (C)
N.D.
N.D.
N.D.
-2.6
+0.3
carbon source
L-Leucine (C)
N.D.
N.D.
N.D.
-2.4
+0.2
carbon source
D-Glucose-6-Phosphate (C)
N.D.
N.D.
N.D.
-2.3
+0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
N.D.
N.D.
N.D.
-2.2
+0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
N.D.
N.D.
N.D.
-2.1
+0.4
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