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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS03575 and ABIE40_RS03580 are separated by 325 nucleotides
ABIE40_RS03580 and ABIE40_RS03585 are separated by 136 nucleotides
ABIE40_RS03585 and ABIE40_RS03590 are separated by 211 nucleotides
ABIE40_RS03590 and ABIE40_RS03595 overlap by 4 nucleotides
ABIE40_RS03575: ABIE40_RS03575 - porin family protein, at 710,417 to 711,076
_RS03575
ABIE40_RS03580: ABIE40_RS03580 - L,D-transpeptidase, at 711,402 to 712,073
_RS03580
ABIE40_RS03585: ABIE40_RS03585 - L,D-transpeptidase, at 712,210 to 712,965
_RS03585
ABIE40_RS03590: ABIE40_RS03590 - DNA-3-methyladenine glycosylase I, at 713,177 to 713,806
_RS03590
ABIE40_RS03595: ABIE40_RS03595 - hypothetical protein, at 713,803 to 714,306
_RS03595
Group
Condition
ABIE40
_RS03575
ABIE40
_RS03580
ABIE40
_RS03585
ABIE40
_RS03590
ABIE40
_RS03595
carbon source
D-Glucuronic Acid (C)
-0.2
-0.1
-0.3
-0.4
-0.2
carbon source
Fumarate (C)
+0.0
-0.0
-0.5
-0.0
-0.3
carbon source
D-Glucuronic Acid (C)
-0.1
-0.1
-0.0
-0.5
-0.2
carbon source
L-Tryptophan (C)
-0.2
-0.0
+0.1
-0.5
-0.3
carbon source
Gelatin (C)
+0.2
-0.2
-0.0
-0.5
-0.0
carbon source
D-Trehalose (C)
-0.1
-0.1
-0.1
-0.4
+0.3
carbon source
Adenosine (C)
+0.2
-0.0
-0.1
-0.5
+0.0
carbon source
L-Alanine (C)
-0.1
+0.2
-0.0
-0.1
-0.3
stress
R2A with 3-octanone 10.6206 mM
+0.0
+0.1
+0.0
+0.1
-0.5
carbon source
D-Raffinose (C)
-0.2
+0.1
+0.1
-0.3
+0.2
carbon source
D-Lactate (C)
-0.2
-0.3
+0.1
+0.2
+0.2
stress
R2A with 3-octanone 5.3129 mM
-0.2
+0.2
-0.0
-0.2
+0.2
carbon source
L-Arabinose (C)
+0.1
+0.1
-0.2
-0.3
+0.2
stress
R2A with 1-octen-3-ol 1.3568235 mM
-0.1
+0.1
+0.2
-0.3
+0.1
stress
R2A with 3-octanone 5.3129 mM
+0.2
+0.2
-0.0
-0.2
-0.2
stress
R2A with 3-octanone 10.6206 mM
-0.2
+0.2
-0.2
+0.3
-0.1
stress
R2A with 3-octanone 15.9309 mM
-0.0
+0.1
-0.1
+0.3
-0.3
carbon source
D-Sorbitol (C)
+0.0
-0.0
+0.1
-0.3
+0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
-0.2
+0.2
+0.2
+0.2
-0.1
carbon source
D-Ribose (C)
-0.1
+0.1
+0.1
-0.3
+0.4
carbon source
D-Fructose (C)
+0.3
+0.0
+0.1
-0.3
+0.1
dmso control
DMSO control
-0.2
-0.0
+0.0
+0.3
+0.4
carbon source
D-Trehalose (C)
+0.1
+0.1
-0.1
+0.3
+0.2
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.0
+0.2
+0.0
+0.4
+0.2
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.2
+0.2
-0.0
+0.3
+0.1
carbon source
L-Alanine (C)
+0.3
+0.1
+0.0
+0.1
+0.3
dmso control
DMSO control
+0.3
-0.0
+0.2
+0.0
+0.3
carbon source
L-Aspartic Acid (C)
+0.1
+0.1
+0.2
+0.1
+0.5
carbon source
5-Keto-D-Gluconic Acid potassium salt (C)
+0.1
+0.0
+0.1
+0.0
+0.7
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.1
+0.1
+0.2
+0.4
+0.3
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