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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS03390 and ABIE40_RS03395 are separated by 167 nucleotides
ABIE40_RS03395 and ABIE40_RS03400 are separated by 43 nucleotides
ABIE40_RS03400 and ABIE40_RS03405 overlap by 4 nucleotides
ABIE40_RS03405 and ABIE40_RS03410 are separated by 55 nucleotides
ABIE40_RS03390: ABIE40_RS03390 - type III polyketide synthase, at 675,525 to 676,577
_RS03390
ABIE40_RS03395: ABIE40_RS03395 - tetratricopeptide repeat protein, at 676,745 to 677,281
_RS03395
ABIE40_RS03400: ABIE40_RS03400 - RNA polymerase sigma factor, at 677,325 to 677,930
_RS03400
ABIE40_RS03405: ABIE40_RS03405 - anti-sigma factor, at 677,927 to 678,724
_RS03405
ABIE40_RS03410: ABIE40_RS03410 - hypothetical protein, at 678,780 to 679,319
_RS03410
Group
Condition
ABIE40
_RS03390
ABIE40
_RS03395
ABIE40
_RS03400
ABIE40
_RS03405
ABIE40
_RS03410
carbon source
L-Citrulline (C)
-0.5
-0.2
-0.2
-3.5
+0.1
carbon source
D-Sorbitol (C)
+0.3
-0.1
-0.5
-3.9
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
-0.1
-0.2
-4.1
+0.1
carbon source
D-Glucuronic Acid (C)
+0.2
-0.3
+0.2
-4.0
-0.0
carbon source
L-Lysine (C)
-0.2
-0.1
+0.1
-4.0
+0.3
carbon source
pyruvate (C)
+0.3
-0.2
-0.2
-3.8
+0.1
carbon source
succinate (C)
+0.3
+0.0
-0.4
-3.9
+0.2
carbon source
5-Keto-D-Gluconic Acid potassium salt (C)
-0.2
-0.0
+0.3
-3.9
+0.2
carbon source
water (C)
-0.1
+0.2
+0.1
-4.1
+0.3
carbon source
water (C)
+0.4
+0.2
-0.0
-4.1
-0.1
carbon source
D-Glucose (C)
+0.1
+0.0
+0.0
-4.1
+0.4
carbon source
L-Aspartic Acid (C)
+0.1
+0.1
+0.4
-4.2
+0.1
carbon source
Adenine (C)
-0.1
-0.1
+0.2
-3.9
+0.4
carbon source
L-Leucine (C)
+0.4
-0.1
+0.1
-4.1
+0.2
carbon source
L-Tryptophan (C)
+0.3
-0.3
+0.4
-3.7
-0.0
carbon source
L-Tryptophan (C)
+0.2
+0.2
-0.3
-3.9
+0.4
carbon source
Fumarate (C)
+0.6
-0.2
+0.1
-3.4
-0.4
carbon source
Carnitine Hydrochloride (C)
+0.4
-0.2
+0.2
-3.9
+0.2
carbon source
5-Keto-D-Gluconic Acid potassium salt (C)
+0.5
+0.0
-0.5
-3.7
+0.4
carbon source
D-Fructose (C)
+0.4
-0.5
+0.5
-3.8
+0.2
carbon source
Gelatin (C)
+0.2
+0.2
+0.1
-4.0
+0.3
carbon source
L-Methionine (C)
+0.3
+0.2
+0.2
-3.9
+0.2
carbon source
D-Galactose (C)
+0.1
+0.1
+0.2
-3.9
+0.3
carbon source
Formate (C)
+0.2
+0.2
+0.4
-3.9
+0.2
carbon source
D-Sorbitol (C)
+0.3
-0.0
+0.5
-3.8
+0.1
carbon source
L-Citrulline (C)
+0.3
-0.2
+0.5
-4.0
+0.3
carbon source
L-Glutamine (C)
+0.2
+0.2
+0.2
-4.0
+0.5
carbon source
L-Aspartic Acid (C)
+0.4
+0.2
+0.2
-3.8
+0.2
carbon source
Itaconic Acid (C)
+0.3
+0.2
+0.3
-3.9
+0.3
carbon source
L-Threonine (C)
+0.2
-0.0
+0.3
-3.8
+0.5
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