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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS01945 and ABIE40_RS01950 are separated by 101 nucleotides
ABIE40_RS01950 and ABIE40_RS01955 are separated by 174 nucleotides
ABIE40_RS01955 and ABIE40_RS01960 are separated by 55 nucleotides
ABIE40_RS01960 and ABIE40_RS01965 overlap by 4 nucleotides
ABIE40_RS01945: ABIE40_RS01945 - calcium-binding protein, at 383,122 to 383,733
_RS01945
ABIE40_RS01950: ABIE40_RS01950 - pyrimidine 5'-nucleotidase, at 383,835 to 384,542
_RS01950
ABIE40_RS01955: ABIE40_RS01955 - magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase, at 384,717 to 386,240
_RS01955
ABIE40_RS01960: ABIE40_RS01960 - trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase, at 386,296 to 387,375
_RS01960
ABIE40_RS01965: ABIE40_RS01965 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 387,372 to 388,145
_RS01965
Group
Condition
ABIE40
_RS01945
ABIE40
_RS01950
ABIE40
_RS01955
ABIE40
_RS01960
ABIE40
_RS01965
carbon source
D-Fructose (C)
-1.6
-0.0
-0.0
+0.0
+0.4
carbon source
L-Citrulline (C)
-1.3
+0.1
-0.0
+0.1
+0.1
stress
R2A with 3-octanone 15.9309 mM
+0.2
-0.2
+0.0
+0.4
-0.6
carbon source
Ethanol (C)
+1.0
-0.1
-0.1
-0.3
-0.3
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.7
-0.0
+0.0
+0.3
-0.5
stress
R2A with 3-octanone 5.3129 mM
+0.7
-0.0
-0.1
+0.4
-0.3
carbon source
Gelatin (C)
+1.0
+0.1
-0.2
-0.3
+0.2
carbon source
D-Glucuronic Acid (C)
+1.1
+0.0
-0.1
-0.2
-0.0
carbon source
L-Tryptophan (C)
+1.1
+0.0
-0.3
-0.3
+0.2
carbon source
D-Galactose (C)
+1.2
+0.1
-0.1
-0.1
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.8
-0.2
+0.0
+0.5
-0.3
carbon source
Thymidine (C)
+0.8
-0.3
+0.4
+0.2
-0.2
stress
R2A with 1-octen-3-ol 0.904549 mM
+1.0
-0.1
+0.2
-0.0
-0.2
carbon source
D-Lactate (C)
+1.1
-0.1
-0.2
-0.1
+0.3
carbon source
pyruvate (C)
+1.0
+0.2
-0.3
+0.1
+0.0
carbon source
L-Alanine (C)
+1.2
+0.1
-0.1
-0.2
+0.1
carbon source
casaminos (C)
+1.2
-0.1
+0.0
-0.0
+0.0
carbon source
a-Cyclodextrin (C)
+1.3
-0.1
-0.1
+0.2
-0.1
carbon source
L-Threonine (C)
+1.6
-0.4
-0.1
+0.0
+0.1
carbon source
L-Threonine (C)
+0.9
-0.1
+0.1
+0.1
+0.3
carbon source
water (C)
+1.2
+0.2
-0.0
-0.2
+0.1
carbon source
L-Methionine (C)
+1.1
-0.0
+0.0
+0.3
-0.0
carbon source
D-Sorbitol (C)
+1.3
+0.1
-0.1
-0.2
+0.3
carbon source
Carnitine Hydrochloride (C)
+1.2
-0.0
-0.1
+0.1
+0.3
carbon source
L-Tryptophan (C)
+1.2
+0.2
-0.0
+0.0
+0.1
carbon source
D-Sorbitol (C)
+1.2
+0.0
+0.1
+0.1
+0.1
carbon source
Adenine (C)
+1.5
+0.1
+0.0
+0.1
-0.2
carbon source
L-Aspartic Acid (C)
+1.3
+0.0
-0.1
+0.0
+0.3
carbon source
D-Raffinose (C)
+1.4
+0.1
+0.1
+0.2
+0.3
carbon source
D-Serine (C)
+1.5
+0.0
+0.0
-0.0
+0.5
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