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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS01480 and ABIE40_RS01485 overlap by 4 nucleotides
ABIE40_RS01485 and ABIE40_RS01490 are separated by 590 nucleotides
ABIE40_RS01490 and ABIE40_RS01495 overlap by 14 nucleotides
ABIE40_RS01495 and ABIE40_RS01500 are separated by 73 nucleotides
ABIE40_RS01480: ABIE40_RS01480 - MFS transporter, at 290,563 to 291,852
_RS01480
ABIE40_RS01485: ABIE40_RS01485 - FadR/GntR family transcriptional regulator, at 291,849 to 292,526
_RS01485
ABIE40_RS01490: ABIE40_RS01490 - class II glutamine amidotransferase, at 293,117 to 293,926
_RS01490
ABIE40_RS01495: ABIE40_RS01495 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 293,913 to 295,124
_RS01495
ABIE40_RS01500: ABIE40_RS01500 - DMT family transporter, at 295,198 to 296,121
_RS01500
Group
Condition
ABIE40
_RS01480
ABIE40
_RS01485
ABIE40
_RS01490
ABIE40
_RS01495
ABIE40
_RS01500
carbon source
Ethanol (C)
-0.4
+0.0
-0.1
N.D.
-0.6
carbon source
D-Fructose (C)
-0.0
-0.1
-0.5
N.D.
-0.4
carbon source
D-Lactate (C)
-0.6
-0.1
+0.0
N.D.
-0.4
carbon source
succinate (C)
-0.5
-0.1
+0.1
N.D.
-0.3
carbon source
casaminos (C)
-0.6
-0.4
+0.1
N.D.
+0.1
carbon source
L-Lysine (C)
-0.4
-0.1
+0.3
N.D.
-0.7
carbon source
L-Methionine (C)
-0.4
+0.0
-0.2
N.D.
-0.2
carbon source
Glycolic Acid (C)
-0.2
+0.0
-0.5
N.D.
+0.0
carbon source
Fumarate (C)
+0.0
-0.1
+0.3
N.D.
-0.7
stress
R2A with 3-octanone 15.9309 mM
+0.4
-0.0
-0.1
N.D.
-0.6
carbon source
Thymidine (C)
-0.6
+0.0
+0.1
N.D.
+0.2
carbon source
L-Lysine (C)
+0.3
-0.4
-0.2
N.D.
-0.0
carbon source
D-Ribose (C)
-0.6
+0.2
+0.1
N.D.
+0.1
carbon source
Itaconic Acid (C)
+0.3
+0.1
-0.4
N.D.
-0.1
carbon source
L-Arabinose (C)
-0.4
-0.0
+0.4
N.D.
-0.1
carbon source
pyruvate (C)
-0.4
+0.0
+0.0
N.D.
+0.3
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.3
+0.2
-0.3
N.D.
-0.2
stress
R2A with 3-octanone 5.3129 mM
+0.3
+0.0
+0.1
N.D.
-0.4
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.2
+0.2
+0.2
N.D.
-0.4
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.3
-0.1
-0.2
N.D.
+0.2
carbon source
L-Citrulline (C)
+0.4
+0.3
-0.2
N.D.
-0.1
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.2
+0.2
-0.2
N.D.
+0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.1
+0.2
+0.5
N.D.
-0.3
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.4
+0.2
-0.4
N.D.
+0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
+0.4
+0.4
+0.2
N.D.
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
+0.3
+0.2
+0.1
N.D.
+0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.1
+0.2
+0.4
N.D.
+0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.4
+0.3
+0.3
N.D.
-0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.2
+0.3
+0.3
N.D.
+0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.3
+0.2
+0.5
N.D.
+0.0
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