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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS00985 and ABIE40_RS00990 are separated by 58 nucleotides
ABIE40_RS00990 and ABIE40_RS00995 are separated by 8 nucleotides
ABIE40_RS00995 and ABIE40_RS01000 are separated by 76 nucleotides
ABIE40_RS01000 and ABIE40_RS01005 are separated by 44 nucleotides
ABIE40_RS00985: ABIE40_RS00985 - DoxX family protein, at 204,812 to 205,228
_RS00985
ABIE40_RS00990: ABIE40_RS00990 - DNA-binding domain-containing protein, at 205,287 to 206,060
_RS00990
ABIE40_RS00995: ABIE40_RS00995 - DUF692 domain-containing protein, at 206,069 to 206,923
_RS00995
ABIE40_RS01000: ABIE40_RS01000 - DUF2282 domain-containing protein, at 207,000 to 207,275
_RS01000
ABIE40_RS01005: ABIE40_RS01005 - DUF2282 domain-containing protein, at 207,320 to 207,589
_RS01005
Group
Condition
ABIE40
_RS00985
ABIE40
_RS00990
ABIE40
_RS00995
ABIE40
_RS01000
ABIE40
_RS01005
carbon source
Fumarate (C)
+1.1
-0.3
-0.0
+0.4
-4.4
carbon source
Thymidine (C)
+0.3
-0.1
+0.0
+0.2
-2.6
carbon source
L-Citrulline (C)
+0.4
-0.2
-0.2
+0.8
-1.4
carbon source
casaminos (C)
+0.9
-0.5
-0.3
-2.0
+1.4
stress
R2A with 3-octanone 10.6206 mM
-0.1
-0.2
+0.3
+0.5
-0.7
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.8
+0.2
+0.1
+0.2
-1.3
carbon source
D-Glucuronic Acid (C)
+0.7
-0.1
-0.1
+0.2
-0.7
carbon source
5-Keto-D-Gluconic Acid potassium salt (C)
+0.5
-0.3
+0.1
-0.6
+0.4
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.4
-0.0
+0.3
+0.4
-0.9
stress
R2A with 3-octanone 15.9309 mM
-0.4
-0.4
+0.2
+0.2
+1.0
carbon source
L-Leucine (C)
+0.9
-0.1
-0.1
-0.4
+0.4
carbon source
a-Cyclodextrin (C)
+0.5
+0.0
-0.0
-0.6
+0.8
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.3
-0.1
+0.2
-0.3
+0.8
carbon source
L-Aspartic Acid (C)
+0.4
+0.0
-0.0
-0.3
+0.9
stress
R2A with 3-octanone 5.3129 mM
+0.7
-0.3
+0.2
+0.4
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.7
-0.2
-0.1
-0.4
+1.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
-0.4
-0.1
+0.3
+0.6
+0.8
r2a no stress control
R2A no stress control
+0.2
-0.3
+0.1
+0.4
+0.9
carbon source
Adenine (C)
+0.6
-0.2
-0.0
+0.2
+0.8
carbon source
Itaconic Acid (C)
+0.3
-0.1
+0.0
+0.5
+0.9
carbon source
L-Alanine (C)
+0.4
-0.3
-0.0
+0.4
+1.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.1
-0.1
+0.3
+0.5
+1.1
carbon source
D-Lactate (C)
+1.3
+0.1
-0.2
+0.3
+0.2
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.3
+0.1
+0.3
+0.6
+0.5
carbon source
L-Tryptophan (C)
+0.7
+0.2
+0.0
+0.2
+0.6
carbon source
Glycolic Acid (C)
+0.6
-0.0
-0.1
+0.6
+0.8
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.2
+0.1
+0.3
+0.3
+1.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.3
+0.1
+0.3
+0.5
+0.9
carbon source
succinate (C)
+0.3
+0.2
+0.1
+0.3
+1.3
carbon source
Itaconic Acid (C)
+0.6
-0.1
+0.0
+0.7
+1.0
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