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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS00285 and ABIE40_RS00290 are separated by 37 nucleotides
ABIE40_RS00290 and ABIE40_RS00295 overlap by 11 nucleotides
ABIE40_RS00295 and ABIE40_RS00300 are separated by 57 nucleotides
ABIE40_RS00300 and ABIE40_RS00305 are separated by 6 nucleotides
ABIE40_RS00285: ABIE40_RS00285 - YbaB/EbfC family nucleoid-associated protein, at 58,438 to 58,761
_RS00285
ABIE40_RS00290: ABIE40_RS00290 - LysE family translocator, at 58,799 to 59,410
_RS00290
ABIE40_RS00295: ABIE40_RS00295 - MOSC domain-containing protein, at 59,400 to 60,029
_RS00295
ABIE40_RS00300: ABIE40_RS00300 - recombination mediator RecR, at 60,087 to 60,692
_RS00300
ABIE40_RS00305: ABIE40_RS00305 - lytic murein transglycosylase, at 60,699 to 61,958
_RS00305
Group
Condition
ABIE40
_RS00285
ABIE40
_RS00290
ABIE40
_RS00295
ABIE40
_RS00300
ABIE40
_RS00305
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
N.D.
-0.3
-0.3
-0.5
-0.4
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
N.D.
-0.5
-0.2
-0.1
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
N.D.
-0.2
-0.0
-0.3
-0.3
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
N.D.
-0.1
-0.3
-0.3
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
N.D.
-0.3
-0.1
-0.3
-0.1
stress
R2A with 1-octen-3-ol 1.3568235 mM
N.D.
-0.2
-0.1
-0.3
-0.2
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
N.D.
-0.3
+0.1
-0.2
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
N.D.
+0.3
+0.0
-0.4
-0.3
stress
R2A with 1-octen-3-ol 1.3568235 mM
N.D.
-0.1
+0.2
-0.4
-0.1
stress
R2A with 1-octen-3-ol 0.904549 mM
N.D.
+0.2
-0.2
-0.3
-0.1
stress
R2A with 3-octanone 5.3129 mM
N.D.
+0.4
-0.3
-0.1
-0.1
r2a no stress control
R2A no stress control
N.D.
+0.2
+0.2
-0.2
-0.2
carbon source
D-Ribose (C)
N.D.
+0.2
+0.2
-0.4
+0.0
carbon source
D-Serine (C)
N.D.
-0.3
+0.2
+0.2
+0.1
carbon source
L-Citrulline (C)
N.D.
+0.4
-0.0
-0.2
+0.1
carbon source
L-Methionine (C)
N.D.
-0.3
+0.3
+0.1
+0.2
carbon source
L-Lysine (C)
N.D.
-0.3
+0.4
+0.1
+0.1
carbon source
succinate (C)
N.D.
-0.1
+0.5
+0.1
+0.1
carbon source
D-Fructose (C)
N.D.
+0.4
+0.2
+0.1
-0.1
carbon source
L-Threonine (C)
N.D.
+0.4
+0.1
-0.1
+0.3
carbon source
a-Cyclodextrin (C)
N.D.
-0.0
+0.4
+0.3
+0.1
carbon source
a-Cyclodextrin (C)
N.D.
+0.2
+0.3
+0.2
+0.1
carbon source
water (C)
N.D.
+0.1
+0.2
+0.2
+0.2
carbon source
D-Galactose (C)
N.D.
+0.3
+0.3
+0.1
+0.2
carbon source
casaminos (C)
N.D.
+0.2
+0.2
+0.1
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
+0.4
+0.3
+0.1
+0.2
carbon source
L-Tryptophan (C)
N.D.
-0.1
+0.6
+0.3
+0.2
carbon source
L-Arabinose (C)
N.D.
+0.2
+0.2
+0.3
+0.3
carbon source
L-Arabinose (C)
N.D.
+0.2
+0.5
+0.2
+0.3
carbon source
Thymidine (C)
N.D.
+0.6
+0.3
+0.3
+0.0
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