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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS29035 and ABID97_RS29040 overlap by 4 nucleotides
ABID97_RS29040 and ABID97_RS29045 are separated by 168 nucleotides
ABID97_RS29045 and ABID97_RS29050 overlap by 4 nucleotides
ABID97_RS29050 and ABID97_RS29055 overlap by 4 nucleotides
ABID97_RS29035: ABID97_RS29035 - 3-isopropylmalate dehydrogenase, at 724,963 to 726,042
_RS29035
ABID97_RS29040: ABID97_RS29040 - IclR family transcriptional regulator, at 726,039 to 726,845
_RS29040
ABID97_RS29045: ABID97_RS29045 - tripartite tricarboxylate transporter substrate binding protein, at 727,014 to 728,030
_RS29045
ABID97_RS29050: ABID97_RS29050 - enoyl-CoA hydratase/isomerase family protein, at 728,027 to 728,833
_RS29050
ABID97_RS29055: ABID97_RS29055 - acetate--CoA ligase family protein, at 728,830 to 730,926
_RS29055
Group
Condition
ABID97
_RS29035
ABID97
_RS29040
ABID97
_RS29045
ABID97
_RS29050
ABID97
_RS29055
carbon source
D,L-Malic Acid (C)
-0.6
-0.8
-0.4
-1.9
-0.4
carbon source
L-Alanine (C)
-0.9
-0.2
-0.4
-0.3
+0.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.7
-0.1
-1.2
-0.5
-0.7
carbon source
L-Fucose (C)
-0.1
-0.5
-0.5
-0.5
-0.1
carbon source
casaminos (C)
-0.3
+0.0
-0.3
-0.5
-0.4
carbon source
acetate (C)
-0.4
+0.2
-0.0
-1.2
-0.1
carbon source
Gly-Glu (C)
-0.6
+0.0
-0.1
-0.6
-0.1
carbon source
D-Glucose (C)
-0.6
-0.1
-0.0
-0.4
-0.2
carbon source
2-Deoxy-D-Ribose (C)
-0.3
-0.0
-0.3
-0.8
+0.0
carbon source
L-Arabinose (C)
-0.3
-0.2
-0.0
-0.8
+0.0
carbon source
L-Glutamine (C)
-0.4
+0.3
-0.4
-0.4
-0.4
carbon source
D-Sorbitol (C)
-0.5
+0.1
-0.2
-0.5
-0.1
carbon source
L-Arabinose (C)
-0.2
-0.4
+0.1
-0.4
-0.2
carbon source
pyruvate (C)
-0.2
-0.4
-0.3
-0.4
+0.1
carbon source
Glucuronamide (C)
-0.2
+0.1
-0.2
-0.9
+0.2
carbon source
D-Serine (C)
+0.0
-0.3
+0.2
-0.5
-0.5
r2a outgrowth control
R2A outgrowth control
+0.0
-0.3
-0.2
-0.7
+0.3
carbon source
L-Malic (C)
-0.3
+0.4
-0.3
-0.5
+0.0
carbon source
L-Threonine (C)
-0.6
+0.3
+0.2
-0.1
-0.3
carbon source
L-Lactate (C)
-0.4
-0.4
+0.4
+0.4
-0.1
carbon source
D-Galactose (C)
-0.3
+0.5
-0.2
+0.6
-0.6
carbon source
butyrate (C)
-0.9
-0.1
+0.1
+0.2
+0.7
carbon source
L-Histidine (C)
-0.1
+0.4
-0.0
-0.5
+0.4
phage
V1_1
-0.2
+0.2
+0.3
-0.4
+0.4
phage
V2_10
+0.6
-0.2
+0.4
-0.0
-0.4
carbon source
propionate (C)
-0.6
+0.2
+0.6
+0.3
-0.3
phage
V1_1
+0.3
-0.1
+0.5
+0.1
-0.4
phage
V2_100
-0.4
-0.5
+0.5
+0.7
+0.1
carbon source
L-Alanine (C)
+0.3
-0.2
-0.3
+0.3
+0.4
carbon source
L-tyrosine (C)
-0.7
-0.2
+0.6
+0.4
+0.3
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