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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS28990 and ABID97_RS28995 are separated by 128 nucleotides
ABID97_RS28995 and ABID97_RS29000 are separated by 76 nucleotides
ABID97_RS29000 and ABID97_RS29005 are separated by 16 nucleotides
ABID97_RS29005 and ABID97_RS29010 are separated by 45 nucleotides
ABID97_RS28990: ABID97_RS28990 - aspartate 1-decarboxylase, at 717,648 to 718,049
_RS28990
ABID97_RS28995: ABID97_RS28995 - dodecin, at 718,178 to 718,384
_RS28995
ABID97_RS29000: ABID97_RS29000 - YciI family protein, at 718,461 to 718,754
_RS29000
ABID97_RS29005: ABID97_RS29005 - tripartite tricarboxylate transporter substrate binding protein, at 718,771 to 719,736
_RS29005
ABID97_RS29010: ABID97_RS29010 - SMP-30/gluconolactonase/LRE family protein, at 719,782 to 720,687
_RS29010
Group
Condition
ABID97
_RS28990
ABID97
_RS28995
ABID97
_RS29000
ABID97
_RS29005
ABID97
_RS29010
carbon source
D-Gluconic Acid (C)
-5.5
N.D.
+0.7
+0.1
-0.1
carbon source
D-Gluconic Acid (C)
-5.6
N.D.
+0.8
+0.2
+0.1
carbon source
Glycerol (C)
-3.8
N.D.
-0.4
+0.0
-0.1
carbon source
Glycerol (C)
-3.6
N.D.
-0.3
+0.0
+0.1
carbon source
Tween 20 (C)
-3.6
N.D.
+0.0
+0.1
+0.1
carbon source
D-Glucose (C)
-3.5
N.D.
+0.3
-0.0
+0.0
carbon source
L-Phenylalanine (C)
-3.2
N.D.
-0.0
+0.1
+0.0
carbon source
Tween 20 (C)
-3.5
N.D.
+0.2
+0.3
-0.0
carbon source
Gly-Glu (C)
-3.3
N.D.
+0.3
+0.2
+0.0
carbon source
L-Lactate (C)
-2.7
N.D.
+0.1
+0.0
-0.1
carbon source
D-Sorbitol (C)
-2.4
N.D.
-0.1
-0.1
-0.1
carbon source
D-Xylose (C)
-2.7
N.D.
-0.0
+0.1
+0.0
carbon source
D-Glucose (C)
-3.0
N.D.
+0.3
+0.1
-0.0
carbon source
L-Histidine (C)
-3.1
N.D.
+0.3
+0.2
-0.0
carbon source
succinate (C)
-2.4
N.D.
-0.1
+0.2
-0.1
carbon source
L-Leucine (C)
-3.1
N.D.
+0.3
+0.2
+0.1
carbon source
L-Lactate (C)
-2.5
N.D.
+0.1
+0.2
-0.1
carbon source
L-Leucine (C)
-3.2
N.D.
+0.6
+0.2
+0.1
carbon source
pyruvate (C)
-2.7
N.D.
+0.2
+0.2
-0.1
carbon source
D-Sorbitol (C)
-2.5
N.D.
+0.1
+0.1
-0.0
carbon source
L-Malic (C)
-2.2
N.D.
+0.3
-0.2
-0.1
carbon source
D,L-Lactate (C)
-2.3
N.D.
-0.0
+0.1
+0.0
carbon source
Gly-Glu (C)
-2.6
N.D.
+0.3
+0.1
+0.1
carbon source
L-Phenylalanine (C)
-2.4
N.D.
+0.1
+0.4
-0.2
carbon source
D,L-Lactate (C)
-2.4
N.D.
+0.3
+0.2
-0.1
carbon source
pyruvate (C)
-2.1
N.D.
+0.3
+0.1
-0.1
carbon source
Glycolic Acid (C)
-2.1
N.D.
+0.4
+0.2
-0.2
carbon source
D-Xylose (C)
-2.6
N.D.
+0.5
+0.3
+0.2
carbon source
D-Galactose (C)
-1.9
N.D.
+0.2
+0.3
-0.2
carbon source
L-Histidine (C)
-2.1
N.D.
+1.0
+0.2
+0.1
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