Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS28945 and ABID97_RS28950 are separated by 10 nucleotidesABID97_RS28950 and ABID97_RS28955 are separated by 30 nucleotidesABID97_RS28955 and ABID97_RS28960 overlap by 8 nucleotidesABID97_RS28960 and ABID97_RS28965 overlap by 4 nucleotides ABID97_RS28945: ABID97_RS28945 - tripartite tricarboxylate transporter TctB family protein, at 708,887 to 709,309 _RS28945 ABID97_RS28950: ABID97_RS28950 - tripartite tricarboxylate transporter permease, at 709,320 to 710,843 _RS28950 ABID97_RS28955: ABID97_RS28955 - MaoC family dehydratase, at 710,874 to 711,317 _RS28955 ABID97_RS28960: ABID97_RS28960 - AMP-binding protein, at 711,310 to 712,962 _RS28960 ABID97_RS28965: ABID97_RS28965 - nitroreductase, at 712,959 to 713,699 _RS28965
Group Condition ABID97_RS28945 ABID97_RS28950 ABID97_RS28955 ABID97_RS28960 ABID97_RS28965
carbon source L-Alanine (C) -1.7 +0.2 N.D. -0.0 -0.4
carbon source D-Mannose (C) -1.2 +0.1 N.D. -0.5 +0.2
carbon source Fumarate (C) -1.3 +0.2 N.D. -0.1 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.2 N.D. -1.0 -0.1
carbon source D-Mannose (C) -1.1 -0.0 N.D. +0.2 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 +0.2 N.D. +0.4 -0.1
carbon source L-Alanine (C) -0.9 +0.1 N.D. +0.2 -0.3
carbon source casaminos (C) -0.6 +0.1 N.D. -0.2 -0.2
phage V2_10 -1.3 +0.1 N.D. +0.5 +0.0
carbon source Tween 20 (C) -0.4 -0.1 N.D. +0.3 -0.4
phage V1_1 -0.9 +0.1 N.D. +0.4 -0.0
carbon source L-Phenylalanine (C) -1.2 +0.2 N.D. +0.3 +0.3
carbon source propionate (C) -0.8 +0.1 N.D. +0.5 -0.2
carbon source L-Leucine (C) -0.8 +0.1 N.D. +0.3 +0.1
phage V1_1 -0.8 +0.1 N.D. +0.4 -0.0
carbon source L-Proline (C) -0.9 +0.1 N.D. +0.6 +0.0
carbon source D-Glucuronic Acid (C) -0.6 -0.6 N.D. +0.5 +0.5
r2a outgrowth control R2A outgrowth control +0.6 -0.2 N.D. -0.4 +0.0
phage V2_1 -0.6 +0.2 N.D. +0.5 +0.0
plant outgrowth control Plant outgrowth control +0.7 -0.1 N.D. -0.4 -0.1
phage V2_10 -0.7 +0.1 N.D. +0.7 +0.2
phage V2_100 -1.7 +0.6 N.D. +1.2 +0.1
carbon source Formate (C) +0.6 +0.1 N.D. -0.3 -0.2
carbon source propionate (C) +1.6 -0.1 N.D. -1.1 +0.2
carbon source D-Glucose (C) +0.7 -0.0 N.D. -0.2 +0.2
carbon source Glycolic Acid (C) +0.4 -0.3 N.D. +0.6 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 +0.0 N.D. -0.3 -0.2
carbon source L-Glutamine (C) +0.8 -0.1 N.D. +0.3 +0.0
carbon source L-tyrosine (C) +0.9 +0.2 N.D. -0.2 +0.2
carbon source D-Arabinose (C) +1.0 +0.1 N.D. +0.2 -0.0
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ABID97_RS28945
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ABID97_RS28950
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ABID97_RS28960
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