Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS28725 and ABID97_RS28730 are separated by 52 nucleotidesABID97_RS28730 and ABID97_RS28735 overlap by 4 nucleotidesABID97_RS28735 and ABID97_RS28740 are separated by 91 nucleotidesABID97_RS28740 and ABID97_RS28745 are separated by 84 nucleotides ABID97_RS28725: ABID97_RS28725 - hypothetical protein, at 662,056 to 662,379 _RS28725 ABID97_RS28730: ABID97_RS28730 - PAS domain-containing sensor histidine kinase, at 662,432 to 663,580 _RS28730 ABID97_RS28735: ABID97_RS28735 - alpha/beta hydrolase, at 663,577 to 664,392 _RS28735 ABID97_RS28740: ABID97_RS28740 - NADH:flavin oxidoreductase/NADH oxidase, at 664,484 to 665,599 _RS28740 ABID97_RS28745: ABID97_RS28745 - GMC family oxidoreductase N-terminal domain-containing protein, at 665,684 to 667,282 _RS28745
Group Condition ABID97_RS28725 ABID97_RS28730 ABID97_RS28735 ABID97_RS28740 ABID97_RS28745
carbon source casaminos (C) -0.5 -0.3 +0.0 -1.3 -0.2
carbon source D-Mannose (C) -0.4 +0.5 -0.2 -1.0 -0.3
carbon source D,L-Malic Acid (C) -0.5 -0.2 -0.2 -0.4 -0.1
carbon source Formate (C) -0.3 +0.3 +0.3 -1.1 -0.1
carbon source D-Sorbitol (C) -0.7 -0.2 -0.2 +0.2 +0.0
carbon source Tween 20 (C) -0.9 -0.1 +0.1 +0.2 -0.2
carbon source Glucuronamide (C) -0.6 +0.7 +0.6 -1.1 -0.4
carbon source 4-Hydroxybenzoic Acid (C) -0.3 +0.0 +0.3 -0.5 -0.2
carbon source Glycolic Acid (C) -0.5 +0.7 +0.8 -1.2 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.2 -0.2 +0.1 -0.4
carbon source L-tyrosine (C) -0.8 -0.1 -0.0 +0.4 +0.1
carbon source D-Sorbitol (C) -0.2 -0.6 -0.1 +0.5 -0.1
control NP -0.7 +0.2 -0.2 +0.3 +0.1
carbon source Gly-Glu (C) -0.1 +0.5 +0.3 -0.8 +0.0
carbon source Ethanol (C) +0.1 +0.4 +0.2 -0.5 -0.2
carbon source Formate (C) -0.0 +0.5 +0.4 -0.4 -0.4
carbon source pyruvate (C) +0.6 +0.1 -0.0 -0.2 -0.4
carbon source Glucuronamide (C) -0.3 +0.6 +0.2 -0.1 -0.2
carbon source L-Leucine (C) +0.6 -0.3 +0.1 +0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.8 +0.2 -0.1 -0.5
carbon source Adenine (C) +0.3 +0.6 +0.3 -0.7 -0.0
carbon source propionate (C) -0.1 -0.3 +0.3 +0.4 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.2 -0.1 +0.7 -0.7
carbon source a-Ketoglutaric (C) +0.1 -0.3 -0.1 +1.1 -0.0
carbon source L-Threonine (C) +0.4 +0.1 +0.1 +0.6 -0.1
phage V2_10 +1.2 -0.1 +0.1 +0.0 +0.2
phage V2_100 +2.3 +0.2 -0.2 +0.1 +0.0
carbon source L-tyrosine (C) +0.4 +0.5 +0.5 +1.3 +2.5
carbon source 2-Deoxy-D-Ribose (C) +0.4 +0.8 +0.5 +1.7 +2.2
carbon source 2-Deoxy-D-Ribose (C) +0.7 +0.7 +0.6 +1.6 +2.6
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ABID97_RS28725
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ABID97_RS28730
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ABID97_RS28745
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