Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS28555 and ABID97_RS28560 are separated by 331 nucleotidesABID97_RS28560 and ABID97_RS28565 are separated by 42 nucleotidesABID97_RS28565 and ABID97_RS28570 are separated by 20 nucleotidesABID97_RS28570 and ABID97_RS28575 are separated by 29 nucleotides ABID97_RS28555: ABID97_RS28555 - methyltransferase domain-containing protein, at 630,168 to 630,980 _RS28555 ABID97_RS28560: ABID97_RS28560 - aldehyde dehydrogenase family protein, at 631,312 to 632,793 _RS28560 ABID97_RS28565: ABID97_RS28565 - cupin domain-containing protein, at 632,836 to 633,555 _RS28565 ABID97_RS28570: ABID97_RS28570 - FAD-binding oxidoreductase, at 633,576 to 634,901 _RS28570 ABID97_RS28575: ABID97_RS28575 - LysR family transcriptional regulator, at 634,931 to 635,848 _RS28575
Group Condition ABID97_RS28555 ABID97_RS28560 ABID97_RS28565 ABID97_RS28570 ABID97_RS28575
carbon source L-Alanine (C) -0.5 N.D. -0.7 -1.3 N.D.
carbon source D-Serine (C) -0.7 N.D. -0.5 -0.0 N.D.
carbon source D-Mannose (C) -0.6 N.D. -0.4 -0.3 N.D.
carbon source Tween 20 (C) -1.1 N.D. -0.0 -0.1 N.D.
carbon source D-Ribose (C) +0.1 N.D. -0.5 -0.6 N.D.
carbon source L-Malic (C) -0.8 N.D. -0.3 +0.3 N.D.
carbon source D,L-Lactate (C) -0.8 N.D. -0.3 +0.4 N.D.
r2a outgrowth control R2A outgrowth control +0.3 N.D. -0.2 -0.8 N.D.
carbon source L-Fucose (C) +0.1 N.D. -0.9 +0.4 N.D.
carbon source pyruvate (C) -1.0 N.D. +0.6 -0.0 N.D.
carbon source L-Asparagine (C) -0.8 N.D. -0.0 +0.4 N.D.
r2a outgrowth control R2A outgrowth control -0.6 N.D. +0.5 -0.2 N.D.
carbon source D-Ribose (C) -0.8 N.D. +0.1 +0.4 N.D.
carbon source Fumarate (C) -0.4 N.D. -0.3 +0.5 N.D.
carbon source L-Histidine (C) -0.2 N.D. -0.7 +0.6 N.D.
carbon source L-tyrosine (C) -0.6 N.D. -0.1 +0.5 N.D.
carbon source a-Ketoglutaric (C) -0.7 N.D. +0.3 +0.2 N.D.
carbon source propionate (C) -0.7 N.D. -0.3 +1.0 N.D.
carbon source Glucuronamide (C) +0.2 N.D. -0.6 +0.4 N.D.
carbon source D,L-Malic Acid (C) -0.4 N.D. +0.3 +0.6 N.D.
carbon source L-tyrosine (C) -0.2 N.D. -0.4 +1.1 N.D.
carbon source L-Alanine (C) +0.2 N.D. -0.4 +0.7 N.D.
phage V2_10 +1.0 N.D. +0.0 -0.4 N.D.
phage V2_100 +1.0 N.D. +0.1 -0.5 N.D.
carbon source D-Galactose (C) -0.3 N.D. +0.8 +0.2 N.D.
carbon source Fumarate (C) +0.6 N.D. +0.6 -0.3 N.D.
phage V1_10 +0.7 N.D. -0.2 +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 N.D. -0.2 +0.5 N.D.
carbon source L-Glutamine (C) -0.0 N.D. +0.6 +0.7 N.D.
carbon source L-Tryptophan (C) +0.2 N.D. +0.6 +0.7 N.D.
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ABID97_RS28555
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ABID97_RS28575
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