Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS28440 and ABID97_RS28445 are separated by 26 nucleotidesABID97_RS28445 and ABID97_RS28450 are separated by 55 nucleotidesABID97_RS28450 and ABID97_RS28455 are separated by 181 nucleotidesABID97_RS28455 and ABID97_RS28460 overlap by 4 nucleotides ABID97_RS28440: ABID97_RS28440 - PrpF domain-containing protein, at 607,473 to 608,618 _RS28440 ABID97_RS28445: ABID97_RS28445 - SDR family oxidoreductase, at 608,645 to 609,424 _RS28445 ABID97_RS28450: ABID97_RS28450 - helix-turn-helix transcriptional regulator, at 609,480 to 610,274 _RS28450 ABID97_RS28455: ABID97_RS28455 - FUSC family protein, at 610,456 to 612,474 _RS28455 ABID97_RS28460: ABID97_RS28460 - DUF1656 domain-containing protein, at 612,471 to 612,683 _RS28460
Group Condition ABID97_RS28440 ABID97_RS28445 ABID97_RS28450 ABID97_RS28455 ABID97_RS28460
carbon source D-Sorbitol (C) -1.5 -0.3 -0.1 -0.1 -0.5
carbon source 2-Deoxy-D-Ribose (C) -1.1 -0.0 -0.1 -0.4 -0.8
carbon source D-Glucuronic Acid (C) -0.1 -0.5 +0.0 -0.4 -1.2
carbon source 4-Hydroxybenzoic Acid (C) -1.3 -0.2 -0.1 -0.5 -0.3
carbon source L-Histidine (C) -1.5 -0.3 +0.1 -0.1 -0.3
carbon source D-Serine (C) +0.1 -0.4 -0.1 -0.1 -1.6
carbon source L-Arabinose (C) -1.1 -0.4 -0.4 -0.4 +0.2
carbon source Ethanol (C) -1.2 -0.5 +0.0 -0.0 -0.5
carbon source D-Mannose (C) -1.0 -0.3 +0.4 -0.3 -0.9
carbon source propionate (C) -0.6 -0.5 -1.0 +0.0 +0.4
carbon source L-Glutamine (C) -1.1 +0.2 +0.0 -0.4 +0.3
plant outgrowth control Plant outgrowth control +0.4 -0.3 +0.1 +0.2 -1.2
carbon source L-Phenylalanine (C) -0.9 +0.1 -0.1 -0.4 +0.7
carbon source D-Gluconic Acid (C) -1.4 -0.3 +0.1 -0.3 +1.3
carbon source L-tyrosine (C) -0.3 +0.1 -1.6 -0.3 +1.8
carbon source D-Sorbitol (C) -0.6 -0.3 +0.2 -0.4 +0.8
carbon source L-tyrosine (C) -0.5 -0.1 +0.6 -0.6 +0.3
carbon source D,L-Malic Acid (C) -0.2 -0.4 +0.2 -0.5 +0.7
carbon source L-Tryptophan (C) -1.0 +0.2 +0.3 -0.2 +0.7
carbon source D-Glucose (C) -0.6 +0.0 +0.1 -0.4 +0.9
carbon source D-Gluconic Acid (C) -0.3 -0.3 -0.1 -0.5 +1.2
carbon source D-Ribose (C) -0.4 -0.6 +0.3 -0.3 +1.2
carbon source L-Proline (C) -0.3 -0.4 +0.7 -0.2 +0.5
carbon source butyrate (C) -0.7 -0.4 -0.3 +0.3 +1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.2 +0.5 +0.4 -1.0
carbon source D-Mannose (C) -0.7 +0.3 -0.3 +0.3 +0.8
carbon source butyrate (C) -0.5 -0.4 +0.1 +0.5 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.3 +0.7 +0.5 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.1 +0.7 +0.7 -0.4
r2a outgrowth control R2A outgrowth control +0.7 +0.4 +0.2 +0.0 +0.8
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