Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS28345 and ABID97_RS28350 are separated by 18 nucleotidesABID97_RS28350 and ABID97_RS28355 are separated by 23 nucleotidesABID97_RS28355 and ABID97_RS28360 overlap by 4 nucleotidesABID97_RS28360 and ABID97_RS28365 are separated by 80 nucleotides ABID97_RS28345: ABID97_RS28345 - nuclear transport factor 2 family protein, at 589,738 to 590,253 _RS28345 ABID97_RS28350: ABID97_RS28350 - amidohydrolase family protein, at 590,272 to 591,267 _RS28350 ABID97_RS28355: ABID97_RS28355 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 591,291 to 592,334 _RS28355 ABID97_RS28360: ABID97_RS28360 - isochorismatase family protein, at 592,331 to 592,972 _RS28360 ABID97_RS28365: ABID97_RS28365 - ABC transporter substrate-binding protein, at 593,053 to 594,231 _RS28365
Group Condition ABID97_RS28345 ABID97_RS28350 ABID97_RS28355 ABID97_RS28360 ABID97_RS28365
carbon source L-Histidine (C) -0.5 -0.7 -4.7 N.D. +0.3
carbon source L-Alanine (C) -0.3 -0.2 -3.7 N.D. +0.5
carbon source D-Serine (C) -0.5 -0.9 -0.7 N.D. -0.3
carbon source D,L-Malic Acid (C) +0.1 -1.1 -1.1 N.D. -0.2
carbon source Glucuronamide (C) +0.2 -2.7 +0.3 N.D. +0.0
phage V2_100 -0.9 -0.2 -1.0 N.D. +0.1
carbon source D-Sorbitol (C) -0.3 -1.0 -0.4 N.D. -0.2
carbon source Fumarate (C) -0.9 -0.5 -0.4 N.D. +0.3
carbon source Ethanol (C) +0.1 -0.5 -1.2 N.D. +0.1
carbon source L-Asparagine (C) -0.5 -1.0 +0.4 N.D. -0.3
carbon source L-Fucose (C) +0.4 +0.0 -1.5 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -1.0 +0.6 N.D. -0.3
carbon source L-Fucose (C) -0.4 -1.1 +0.3 N.D. +0.1
carbon source L-Lactate (C) -0.5 +0.6 -1.0 N.D. -0.2
plant outgrowth control Plant outgrowth control +0.3 -1.0 +0.4 N.D. -0.4
carbon source propionate (C) -1.6 +1.6 -0.3 N.D. -0.3
carbon source L-Arabinose (C) -0.2 +0.9 -0.9 N.D. -0.2
carbon source L-tyrosine (C) -0.5 +0.7 -0.6 N.D. -0.1
carbon source a-Ketoglutaric (C) -0.4 +0.8 -0.7 N.D. -0.1
carbon source D-Galactose (C) -0.0 +0.7 -1.0 N.D. +0.1
carbon source Formate (C) -0.3 +1.0 -0.9 N.D. +0.1
r2a outgrowth control R2A outgrowth control +0.6 -0.5 +0.4 N.D. -0.5
carbon source L-Phenylalanine (C) -0.5 +1.0 -0.5 N.D. +0.2
carbon source propionate (C) -1.1 +1.2 +0.5 N.D. -0.1
carbon source L-tyrosine (C) -0.4 +0.2 +1.1 N.D. -0.3
carbon source L-Threonine (C) -0.2 +1.3 -0.5 N.D. +0.3
carbon source 2-Deoxy-D-Ribose (C) +0.3 +1.3 -0.7 N.D. -0.0
carbon source 4-Hydroxybenzoic Acid (C) -0.4 +0.9 +0.4 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -1.2 +3.0 N.D. -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.0 +4.2 N.D. -0.3
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