Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS28300 and ABID97_RS28305 are separated by 1 nucleotidesABID97_RS28305 and ABID97_RS28310 are separated by 84 nucleotidesABID97_RS28310 and ABID97_RS28315 are separated by 1 nucleotidesABID97_RS28315 and ABID97_RS28320 are separated by 6 nucleotides ABID97_RS28300: ABID97_RS28300 - acyl-CoA dehydrogenase, at 578,783 to 580,573 _RS28300 ABID97_RS28305: ABID97_RS28305 - MarR family winged helix-turn-helix transcriptional regulator, at 580,575 to 581,102 _RS28305 ABID97_RS28310: ABID97_RS28310 - alpha/beta hydrolase, at 581,187 to 581,993 _RS28310 ABID97_RS28315: ABID97_RS28315 - 2Fe-2S iron-sulfur cluster-binding protein, at 581,995 to 583,212 _RS28315 ABID97_RS28320: ABID97_RS28320 - FAD binding domain-containing protein, at 583,219 to 584,070 _RS28320
Group Condition ABID97_RS28300 ABID97_RS28305 ABID97_RS28310 ABID97_RS28315 ABID97_RS28320
carbon source D,L-Malic Acid (C) N.D. N.D. -0.2 +0.1 -2.2
carbon source D-Serine (C) N.D. N.D. -0.3 -0.5 -0.8
carbon source D-Mannose (C) N.D. N.D. -0.3 -0.3 -0.7
carbon source L-Histidine (C) N.D. N.D. -0.4 -0.4 -0.4
phage V1_1 N.D. N.D. -0.3 -0.5 -0.4
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -0.1 -0.2 -0.8
carbon source Tween 20 (C) N.D. N.D. -0.0 -0.4 -0.6
carbon source L-Fucose (C) N.D. N.D. -0.4 +0.0 -0.7
phage V2_100 N.D. N.D. -0.1 -1.0 +0.1
r2a outgrowth control R2A outgrowth control N.D. N.D. -0.2 -0.7 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.4 -0.2 -0.5
carbon source Ethanol (C) N.D. N.D. +0.2 -1.0 +0.3
carbon source L-Glutamine (C) N.D. N.D. -0.4 -0.3 +0.5
carbon source acetate (C) N.D. N.D. +0.1 -0.6 +0.4
carbon source D-Sorbitol (C) N.D. N.D. -0.6 +0.2 +0.6
carbon source L-tyrosine (C) N.D. N.D. -0.4 -0.3 +0.9
carbon source L-Threonine (C) N.D. N.D. +0.1 -0.4 +0.6
carbon source D-Sorbitol (C) N.D. N.D. -0.1 -0.5 +0.9
carbon source succinate (C) N.D. N.D. +0.1 -0.4 +0.7
carbon source D-Ribose (C) N.D. N.D. +0.2 -0.3 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.4 -0.2 +0.6
carbon source casaminos (C) N.D. N.D. +0.3 -0.2 +0.6
carbon source L-Alanine (C) N.D. N.D. -0.2 +0.4 +0.5
carbon source D-Glucose (C) N.D. N.D. -0.1 +0.2 +0.8
carbon source propionate (C) N.D. N.D. +0.5 +0.1 +0.5
carbon source L-Alanine (C) N.D. N.D. +0.3 +0.8 +0.2
carbon source L-Glutamine (C) N.D. N.D. +0.3 +0.4 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.3 +1.4 +0.2
carbon source butyrate (C) N.D. N.D. +1.8 -0.1 +0.9
carbon source butyrate (C) N.D. N.D. +1.7 +0.3 +0.7
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ABID97_RS28300
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ABID97_RS28305
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ABID97_RS28320
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