Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS28140 and ABID97_RS28145 are separated by 170 nucleotidesABID97_RS28145 and ABID97_RS28150 are separated by 18 nucleotidesABID97_RS28150 and ABID97_RS28155 are separated by 117 nucleotidesABID97_RS28155 and ABID97_RS28160 are separated by 97 nucleotides ABID97_RS28140: ABID97_RS28140 - hypothetical protein, at 547,131 to 547,550 _RS28140 ABID97_RS28145: ABID97_RS28145 - methyltransferase domain-containing protein, at 547,721 to 548,533 _RS28145 ABID97_RS28150: ABID97_RS28150 - 3-deoxy-7-phosphoheptulonate synthase, at 548,552 to 549,679 _RS28150 ABID97_RS28155: ABID97_RS28155 - YihY/virulence factor BrkB family protein, at 549,797 to 550,933 _RS28155 ABID97_RS28160: ABID97_RS28160 - sensor domain-containing diguanylate cyclase, at 551,031 to 552,563 _RS28160
Group Condition ABID97_RS28140 ABID97_RS28145 ABID97_RS28150 ABID97_RS28155 ABID97_RS28160
carbon source L-Arabinose (C) +0.2 -0.1 -1.3 -0.5 -0.2
carbon source L-Alanine (C) -0.0 -0.2 -0.3 -0.2 -0.3
carbon source D-Galactose (C) +0.1 -0.3 -0.3 -0.1 -0.3
control NP +0.2 -0.5 -0.3 -0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.5 -0.7 +0.3 +0.2
carbon source D-Mannose (C) +0.0 +0.3 -0.7 -0.4 +0.1
r2a outgrowth control R2A outgrowth control +0.3 -0.5 +0.4 -0.5 -0.2
carbon source L-Histidine (C) -0.1 +0.4 -0.4 +0.0 -0.2
carbon source propionate (C) +0.3 -0.3 -0.2 -0.2 +0.2
plant outgrowth control Plant outgrowth control +0.3 -0.6 +0.3 +0.1 -0.2
carbon source acetate (C) +0.2 -0.2 -0.2 +0.2 -0.1
carbon source D-Fructose (C) -0.1 +0.5 -0.3 +0.0 +0.0
carbon source D-Glucuronic Acid (C) +0.0 -0.3 +0.6 -0.2 +0.0
carbon source Gly-Glu (C) +0.2 +0.3 -0.4 +0.1 +0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.0 +0.1 +0.4 -0.4 +0.1
phage V2_100 +0.1 +0.7 -0.2 +0.0 -0.3
carbon source L-Histidine (C) +0.1 +0.4 -0.4 +0.1 +0.1
carbon source L-Lactate (C) +0.1 +0.5 -0.5 +0.1 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.2 -0.4 +0.4 +0.5
phage V2_10 +0.3 -0.1 +0.5 -0.2 -0.1
carbon source L-Alanine (C) +0.2 +0.4 +0.2 -0.1 -0.1
carbon source Glucuronamide (C) +0.1 +0.3 +0.5 -0.1 -0.1
carbon source casaminos (C) +0.3 +0.4 +0.2 -0.1 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.2 -0.1 +0.2 +0.3
carbon source succinate (C) +0.1 +0.3 +0.4 +0.2 -0.0
carbon source Glycerol (C) +0.2 +0.3 +0.3 +0.2 -0.0
carbon source Glycolic Acid (C) +0.2 +0.5 +0.2 +0.1 +0.0
carbon source 4-Hydroxybenzoic Acid (C) +0.3 +0.2 +0.6 -0.0 +0.1
carbon source D,L-Malic Acid (C) +0.2 +0.5 +0.8 -0.1 +0.0
carbon source propionate (C) +0.3 +0.4 +0.5 +0.1 +0.3
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