Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS28005 and ABID97_RS28010 overlap by 8 nucleotidesABID97_RS28010 and ABID97_RS28015 overlap by 8 nucleotidesABID97_RS28015 and ABID97_RS28020 overlap by 11 nucleotidesABID97_RS28020 and ABID97_RS28025 overlap by 11 nucleotides ABID97_RS28005: ABID97_RS28005 - phosphopyruvate hydratase, at 519,383 to 520,462 _RS28005 ABID97_RS28010: ABID97_RS28010 - hypothetical protein, at 520,455 to 520,676 _RS28010 ABID97_RS28015: ABID97_RS28015 - cupin domain-containing protein, at 520,669 to 521,280 _RS28015 ABID97_RS28020: ABID97_RS28020 - ABC transporter ATP-binding protein, at 521,270 to 521,977 _RS28020 ABID97_RS28025: ABID97_RS28025 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 521,967 to 523,736 _RS28025
Group Condition ABID97_RS28005 ABID97_RS28010 ABID97_RS28015 ABID97_RS28020 ABID97_RS28025
carbon source butyrate (C) -2.2 N.D. N.D. -0.8 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 N.D. N.D. -0.7 -0.4
r2a outgrowth control R2A outgrowth control -0.8 N.D. N.D. -0.0 -0.5
plant outgrowth control Plant outgrowth control +0.4 N.D. N.D. -0.9 -0.5
carbon source D-Galactose (C) -0.2 N.D. N.D. -0.6 -0.2
carbon source Glycerol (C) -0.2 N.D. N.D. -0.5 -0.3
r2a outgrowth control R2A outgrowth control -0.5 N.D. N.D. -0.6 +0.3
r2a outgrowth control R2A outgrowth control -0.5 N.D. N.D. -0.5 +0.2
carbon source D-Serine (C) +0.4 N.D. N.D. -0.9 -0.1
carbon source L-Tryptophan (C) +0.4 N.D. N.D. -0.7 -0.1
carbon source butyrate (C) +0.4 N.D. N.D. -0.9 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 N.D. N.D. -0.3 -0.4
carbon source D-Ribose (C) +0.1 N.D. N.D. -0.7 +0.3
carbon source D-Ribose (C) +0.3 N.D. N.D. -0.8 +0.2
carbon source D-Glucose (C) +0.4 N.D. N.D. -0.6 -0.0
carbon source D-Glucose (C) +0.4 N.D. N.D. -0.8 +0.2
carbon source Fumarate (C) -0.6 N.D. N.D. +0.5 +0.1
carbon source propionate (C) +0.4 N.D. N.D. -0.6 +0.4
carbon source Glucuronamide (C) -0.6 N.D. N.D. +0.7 +0.2
carbon source Adenine (C) -0.3 N.D. N.D. +0.8 -0.2
phage V1_10 +0.2 N.D. N.D. +0.6 -0.3
carbon source L-Glutamic (C) +0.7 N.D. N.D. -0.4 +0.3
carbon source L-Alanine (C) +0.6 N.D. N.D. -0.1 +0.3
carbon source L-Arabinose (C) +0.3 N.D. N.D. +0.6 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +1.3 N.D. N.D. +0.1 -0.3
carbon source D-Xylose (C) +0.3 N.D. N.D. +0.6 +0.2
carbon source D-Gluconic Acid (C) +1.0 N.D. N.D. +0.0 +0.0
carbon source L-Threonine (C) +0.6 N.D. N.D. +0.7 -0.0
carbon source L-tyrosine (C) +0.2 N.D. N.D. +1.2 +0.0
carbon source L-Fucose (C) +1.0 N.D. N.D. +0.7 +0.2
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