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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS27660 and ABID97_RS27665 are separated by 61 nucleotides
ABID97_RS27665 and ABID97_RS27670 are separated by 382 nucleotides
ABID97_RS27670 and ABID97_RS27675 are separated by 0 nucleotides
ABID97_RS27675 and ABID97_RS27680 are separated by 31 nucleotides
ABID97_RS27660: ABID97_RS27660 - LysR family transcriptional regulator, at 450,941 to 451,924
_RS27660
ABID97_RS27665: ABID97_RS27665 - LysR family transcriptional regulator, at 451,986 to 452,882
_RS27665
ABID97_RS27670: ABID97_RS27670 - glycerate kinase, at 453,265 to 454,569
_RS27670
ABID97_RS27675: ABID97_RS27675 - pyruvate kinase, at 454,570 to 455,988
_RS27675
ABID97_RS27680: ABID97_RS27680 - hypothetical protein, at 456,020 to 456,196
_RS27680
Group
Condition
ABID97
_RS27660
ABID97
_RS27665
ABID97
_RS27670
ABID97
_RS27675
ABID97
_RS27680
carbon source
Glycolic Acid (C)
+0.6
-6.4
-5.6
-2.5
N.D.
carbon source
Glycolic Acid (C)
+0.4
-6.4
-4.8
-2.4
N.D.
carbon source
Glucuronamide (C)
-0.7
-0.4
-0.3
-0.1
N.D.
carbon source
Adenine (C)
-0.1
-1.2
+0.1
+0.0
N.D.
carbon source
L-Alanine (C)
+0.0
-1.3
-0.1
+0.1
N.D.
carbon source
D-Glucose (C)
-0.2
-1.0
-0.1
+0.1
N.D.
carbon source
Ethanol (C)
-0.3
-0.8
+0.2
-0.2
N.D.
carbon source
Formate (C)
-0.5
-0.3
+0.2
-0.5
N.D.
carbon source
D-Arabinose (C)
-0.3
-1.0
+0.2
+0.0
N.D.
carbon source
D-Galactose (C)
-0.5
-1.0
+0.2
+0.2
N.D.
carbon source
Glycerol (C)
-0.5
-0.9
+0.3
+0.1
N.D.
carbon source
D,L-Malic Acid (C)
+0.3
-0.7
+0.2
-0.7
N.D.
phage
V2_10
-0.4
-0.9
+0.3
+0.2
N.D.
carbon source
butyrate (C)
-0.2
-0.9
+0.2
+0.0
N.D.
carbon source
D-Ribose (C)
-0.6
-0.7
+0.3
+0.1
N.D.
carbon source
L-Threonine (C)
-0.4
-0.7
+0.1
+0.2
N.D.
carbon source
L-Lactate (C)
+0.1
-1.1
+0.2
+0.0
N.D.
carbon source
Fumarate (C)
-0.3
-0.8
+0.2
+0.1
N.D.
carbon source
Gly-Glu (C)
+0.0
-1.0
+0.2
+0.3
N.D.
carbon source
Glucuronamide (C)
-0.3
-0.4
-0.1
+0.4
N.D.
carbon source
D,L-Lactate (C)
+0.4
-0.5
+0.0
-0.1
N.D.
carbon source
propionate (C)
+0.1
-0.8
+0.5
-0.0
N.D.
carbon source
L-Phenylalanine (C)
-0.1
-0.8
+0.4
+0.4
N.D.
carbon source
Tween 20 (C)
-0.4
-0.2
+0.3
+0.4
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.4
+0.3
+0.2
N.D.
carbon source
butyrate (C)
+0.6
+0.3
-0.1
-0.5
N.D.
carbon source
L-Histidine (C)
+0.0
-0.4
+0.5
+0.3
N.D.
carbon source
D-Mannose (C)
-0.5
+0.5
-0.1
+0.6
N.D.
carbon source
a-Ketoglutaric (C)
+0.5
-0.3
+0.3
+0.1
N.D.
r2a outgrowth control
R2A outgrowth control
-0.2
+0.7
+0.2
+0.6
N.D.
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