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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS27650 and ABID97_RS27655 overlap by 4 nucleotides
ABID97_RS27655 and ABID97_RS27660 are separated by 101 nucleotides
ABID97_RS27660 and ABID97_RS27665 are separated by 61 nucleotides
ABID97_RS27665 and ABID97_RS27670 are separated by 382 nucleotides
ABID97_RS27650: ABID97_RS27650 - tripartite tricarboxylate transporter substrate binding protein, at 448,627 to 449,613
_RS27650
ABID97_RS27655: ABID97_RS27655 - pyridoxal phosphate-dependent aminotransferase, at 449,610 to 450,839
_RS27655
ABID97_RS27660: ABID97_RS27660 - LysR family transcriptional regulator, at 450,941 to 451,924
_RS27660
ABID97_RS27665: ABID97_RS27665 - LysR family transcriptional regulator, at 451,986 to 452,882
_RS27665
ABID97_RS27670: ABID97_RS27670 - glycerate kinase, at 453,265 to 454,569
_RS27670
Group
Condition
ABID97
_RS27650
ABID97
_RS27655
ABID97
_RS27660
ABID97
_RS27665
ABID97
_RS27670
carbon source
Glycolic Acid (C)
+0.1
+0.0
+0.4
-6.4
-4.8
carbon source
Glycolic Acid (C)
+0.2
+0.8
+0.6
-6.4
-5.6
carbon source
L-Arabinose (C)
-0.6
-2.7
-0.2
-0.5
+0.0
phage
V2_10
-0.0
-1.5
-0.4
-0.9
+0.3
phage
V1_10
+0.1
-2.3
-0.2
-0.0
+0.1
carbon source
D-Galactose (C)
-0.2
-0.6
-0.5
-1.0
+0.2
carbon source
Glucuronamide (C)
-0.2
-0.5
-0.7
-0.4
-0.3
carbon source
D-Arabinose (C)
+0.1
-0.9
-0.3
-1.0
+0.2
carbon source
L-Threonine (C)
-0.4
-0.3
-0.4
-0.7
+0.1
carbon source
L-Alanine (C)
+0.2
-0.6
+0.0
-1.3
-0.1
carbon source
Tween 20 (C)
+0.0
-1.2
-0.4
-0.2
+0.3
carbon source
L-tyrosine (C)
+0.2
-1.2
+0.2
-0.2
+0.0
carbon source
Glycerol (C)
-0.0
+0.1
-0.5
-0.9
+0.3
carbon source
butyrate (C)
-0.4
+0.3
-0.2
-0.9
+0.2
carbon source
D-Glucuronic Acid (C)
+0.2
-0.7
+0.0
-0.8
+0.2
carbon source
D-Glucose (C)
-0.1
+0.5
-0.2
-1.0
-0.1
carbon source
Adenine (C)
+0.0
+0.4
-0.1
-1.2
+0.1
carbon source
L-Tryptophan (C)
-0.5
+0.2
-0.0
-0.7
+0.2
carbon source
D-Ribose (C)
+0.0
+0.1
-0.6
-0.7
+0.3
carbon source
Fumarate (C)
-0.1
+0.2
-0.3
-0.8
+0.2
carbon source
Ethanol (C)
+0.3
-0.1
-0.3
-0.8
+0.2
carbon source
L-tyrosine (C)
-0.5
-0.1
+0.6
-0.4
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
-0.7
+0.2
-0.4
+0.3
carbon source
D-Mannose (C)
-0.5
+0.2
-0.5
+0.5
-0.1
carbon source
casaminos (C)
+0.2
-0.7
-0.2
+0.4
+0.1
carbon source
propionate (C)
+0.7
-0.7
+0.1
-0.8
+0.5
carbon source
D,L-Malic Acid (C)
-0.2
+0.6
+0.3
-0.7
+0.2
r2a outgrowth control
R2A outgrowth control
+0.1
-0.4
-0.2
+0.7
+0.2
carbon source
L-Histidine (C)
+0.2
+0.6
+0.0
-0.4
+0.5
carbon source
butyrate (C)
+0.5
+0.2
+0.6
+0.3
-0.1
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