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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS27570 and ABID97_RS27575 overlap by 4 nucleotides
ABID97_RS27575 and ABID97_RS27580 overlap by 1 nucleotides
ABID97_RS27580 and ABID97_RS27585 are separated by 31 nucleotides
ABID97_RS27585 and ABID97_RS27590 are separated by 449 nucleotides
ABID97_RS27570: ABID97_RS27570 - ABC transporter ATP-binding protein, at 431,711 to 432,574
_RS27570
ABID97_RS27575: ABID97_RS27575 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 432,571 to 433,890
_RS27575
ABID97_RS27580: ABID97_RS27580 - branched-chain amino acid ABC transporter permease LivH, at 433,890 to 434,804
_RS27580
ABID97_RS27585: ABID97_RS27585 - branched-chain amino acid ABC transporter substrate-binding protein, at 434,836 to 435,939
_RS27585
ABID97_RS27590: ABID97_RS27590 - L-glutamate gamma-semialdehyde dehydrogenase, at 436,389 to 437,939
_RS27590
Group
Condition
ABID97
_RS27570
ABID97
_RS27575
ABID97
_RS27580
ABID97
_RS27585
ABID97
_RS27590
carbon source
L-tyrosine (C)
-0.5
-0.3
-0.8
-3.2
+0.9
carbon source
D-Xylose (C)
+0.0
+0.0
-0.8
-1.4
-0.1
carbon source
D,L-Lactate (C)
-0.3
+0.2
-0.4
-1.6
-0.1
carbon source
D-Mannose (C)
-0.1
-0.3
-0.4
-0.8
-0.5
carbon source
L-Arabinose (C)
-0.2
-0.4
-0.4
-0.1
-0.6
carbon source
L-Histidine (C)
-0.1
-0.2
-0.5
-1.1
+0.2
carbon source
2-Deoxy-D-Ribose (C)
-0.4
-0.3
-0.5
-0.0
-0.4
carbon source
succinate (C)
+0.1
-0.2
+0.1
-1.1
+0.3
carbon source
D,L-Malic Acid (C)
+0.0
-0.1
+0.8
-1.8
+0.4
carbon source
L-Alanine (C)
+0.2
-0.0
-1.5
+0.8
+0.1
carbon source
L-Fucose (C)
+0.1
+0.7
-0.3
-1.1
+0.4
r2a outgrowth control
R2A outgrowth control
+0.0
+0.0
-0.8
+1.4
-0.9
carbon source
L-Histidine (C)
+0.5
-0.3
-0.4
+0.5
-0.5
carbon source
4-Hydroxybenzoic Acid (C)
-0.6
-0.0
-0.0
+0.8
-0.1
carbon source
butyrate (C)
-0.4
+0.0
-0.7
+0.7
+0.5
carbon source
D-Ribose (C)
+0.2
-0.1
+0.9
-1.0
+0.6
carbon source
a-Ketoglutaric (C)
-0.1
+0.4
-0.3
+0.6
+0.2
carbon source
L-Phenylalanine (C)
-0.2
+0.1
-0.1
+0.8
+0.4
carbon source
Glycerol (C)
+0.2
-0.1
-0.3
+1.1
+0.2
carbon source
L-Glutamine (C)
+0.3
+0.1
+0.4
+0.6
-0.2
carbon source
D-Fructose (C)
+0.3
-0.1
+0.2
+1.0
-0.1
phage
V2_100
+0.0
+0.6
-1.9
+2.0
+0.5
carbon source
Ethanol (C)
-0.0
+0.1
+0.3
+1.1
+0.2
carbon source
Adenine (C)
-0.2
+0.0
+0.4
+1.0
+0.5
carbon source
Glycolic Acid (C)
+0.3
+0.1
+0.3
+0.9
+0.0
carbon source
D-Glucose (C)
+0.2
+0.2
+0.7
+0.6
+0.0
carbon source
L-Fucose (C)
+0.1
+0.8
+0.1
+0.7
+0.2
carbon source
Glycolic Acid (C)
+0.4
-0.1
+0.6
+1.0
+0.2
carbon source
acetate (C)
+0.3
+0.0
+0.8
+1.2
-0.0
carbon source
propionate (C)
+0.3
-0.0
+0.1
+1.7
+0.6
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