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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS27375 and ABID97_RS27380 overlap by 4 nucleotides
ABID97_RS27380 and ABID97_RS27385 overlap by 4 nucleotides
ABID97_RS27385 and ABID97_RS27390 are separated by 1 nucleotides
ABID97_RS27390 and ABID97_RS27395 are separated by 14 nucleotides
ABID97_RS27375: ABID97_RS27375 - acetyl-CoA carboxylase biotin carboxylase subunit, at 392,695 to 394,047
_RS27375
ABID97_RS27380: ABID97_RS27380 - 5-oxoprolinase subunit PxpB, at 394,044 to 394,715
_RS27380
ABID97_RS27385: ABID97_RS27385 - biotin-dependent carboxyltransferase family protein, at 394,712 to 395,701
_RS27385
ABID97_RS27390: ABID97_RS27390 - biotin/lipoyl-containing protein, at 395,703 to 396,116
_RS27390
ABID97_RS27395: ABID97_RS27395 - 5-oxoprolinase subunit PxpA, at 396,131 to 396,895
_RS27395
Group
Condition
ABID97
_RS27375
ABID97
_RS27380
ABID97
_RS27385
ABID97
_RS27390
ABID97
_RS27395
carbon source
Tween 20 (C)
N.D.
N.D.
-0.4
N.D.
-1.0
carbon source
L-Arabinose (C)
N.D.
N.D.
-0.8
N.D.
-0.5
carbon source
propionate (C)
N.D.
N.D.
+0.3
N.D.
-1.4
phage
V2_10
N.D.
N.D.
-0.8
N.D.
-0.1
carbon source
L-Leucine (C)
N.D.
N.D.
-0.4
N.D.
-0.4
carbon source
Glycolic Acid (C)
N.D.
N.D.
-0.5
N.D.
-0.2
carbon source
L-Alanine (C)
N.D.
N.D.
+0.0
N.D.
-0.7
control
NP
N.D.
N.D.
+0.1
N.D.
-0.6
carbon source
D-Xylose (C)
N.D.
N.D.
+0.2
N.D.
-0.6
carbon source
Fumarate (C)
N.D.
N.D.
+0.4
N.D.
-0.6
carbon source
Formate (C)
N.D.
N.D.
-0.4
N.D.
+0.3
carbon source
D,L-Malic Acid (C)
N.D.
N.D.
+0.4
N.D.
-0.5
carbon source
Gly-Glu (C)
N.D.
N.D.
+0.4
N.D.
-0.4
carbon source
D,L-Lactate (C)
N.D.
N.D.
+0.4
N.D.
-0.4
carbon source
Glycolic Acid (C)
N.D.
N.D.
+0.3
N.D.
-0.3
carbon source
D-Arabinose (C)
N.D.
N.D.
+0.5
N.D.
-0.4
plant outgrowth control
Plant outgrowth control
N.D.
N.D.
-0.2
N.D.
+0.5
carbon source
butyrate (C)
N.D.
N.D.
-0.2
N.D.
+0.5
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
+0.5
N.D.
-0.3
carbon source
propionate (C)
N.D.
N.D.
+0.5
N.D.
-0.2
plant outgrowth control
Plant outgrowth control
N.D.
N.D.
-0.3
N.D.
+0.7
phage
V1_1
N.D.
N.D.
+0.4
N.D.
+0.2
carbon source
L-Leucine (C)
N.D.
N.D.
+0.4
N.D.
+0.3
carbon source
L-Histidine (C)
N.D.
N.D.
+0.4
N.D.
+0.3
carbon source
L-Tryptophan (C)
N.D.
N.D.
+0.4
N.D.
+0.3
carbon source
Fumarate (C)
N.D.
N.D.
+0.4
N.D.
+0.4
carbon source
L-Histidine (C)
N.D.
N.D.
+0.8
N.D.
+0.3
carbon source
D-Glucuronic Acid (C)
N.D.
N.D.
+0.8
N.D.
+0.3
carbon source
butyrate (C)
N.D.
N.D.
+0.3
N.D.
+0.9
carbon source
D,L-Malic Acid (C)
N.D.
N.D.
+0.8
N.D.
+0.4
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