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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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500 nt
ABID97_RS27265 and ABID97_RS27270 are separated by 10 nucleotides
ABID97_RS27270 and ABID97_RS27275 are separated by 59 nucleotides
ABID97_RS27275 and ABID97_RS27280 are separated by 50 nucleotides
ABID97_RS27280 and ABID97_RS27285 are separated by 21 nucleotides
ABID97_RS27265: ABID97_RS27265 - fumarylacetoacetate hydrolase family protein, at 367,120 to 367,989
_RS27265
ABID97_RS27270: ABID97_RS27270 - alpha/beta hydrolase, at 368,000 to 368,788
_RS27270
ABID97_RS27275: ABID97_RS27275 - amidohydrolase family protein, at 368,848 to 370,188
_RS27275
ABID97_RS27280: ABID97_RS27280 - nuclear transport factor 2 family protein, at 370,239 to 370,604
_RS27280
ABID97_RS27285: ABID97_RS27285 - LysR family transcriptional regulator, at 370,626 to 371,519
_RS27285
Group
Condition
ABID97
_RS27265
ABID97
_RS27270
ABID97
_RS27275
ABID97
_RS27280
ABID97
_RS27285
carbon source
L-Arabinose (C)
-2.2
N.D.
+0.0
N.D.
+0.4
carbon source
L-tyrosine (C)
-0.5
N.D.
-0.7
N.D.
-0.5
carbon source
L-Asparagine (C)
-0.6
N.D.
-0.4
N.D.
-0.7
carbon source
D-Arabinose (C)
-0.8
N.D.
-0.6
N.D.
-0.0
carbon source
L-Histidine (C)
-0.8
N.D.
-0.3
N.D.
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
-1.3
N.D.
-0.0
N.D.
+0.0
carbon source
acetate (C)
-0.9
N.D.
-0.3
N.D.
-0.2
carbon source
butyrate (C)
-1.1
N.D.
-0.4
N.D.
+0.2
carbon source
succinate (C)
-0.5
N.D.
-0.4
N.D.
-0.3
carbon source
Gly-Glu (C)
-0.9
N.D.
+0.0
N.D.
-0.3
carbon source
a-Ketoglutaric (C)
-0.7
N.D.
-0.3
N.D.
-0.1
carbon source
Tween 20 (C)
-0.4
N.D.
-0.3
N.D.
-0.3
carbon source
L-Glutamic (C)
-1.0
N.D.
-0.4
N.D.
+0.3
carbon source
Glycolic Acid (C)
-0.5
N.D.
-0.3
N.D.
-0.3
carbon source
L-Histidine (C)
-0.9
N.D.
-0.1
N.D.
+0.1
carbon source
D-Lactate (C)
-1.1
N.D.
+0.0
N.D.
+0.2
carbon source
D,L-Malic Acid (C)
+0.3
N.D.
-1.0
N.D.
-0.1
carbon source
pyruvate (C)
-0.8
N.D.
-0.2
N.D.
+0.1
carbon source
Fumarate (C)
-0.7
N.D.
-0.3
N.D.
+0.2
carbon source
D-Gluconic Acid (C)
-1.0
N.D.
-0.0
N.D.
+0.3
carbon source
propionate (C)
-0.9
N.D.
-0.2
N.D.
+0.4
carbon source
L-Proline (C)
-0.9
N.D.
-0.1
N.D.
+0.4
carbon source
L-Fucose (C)
-1.0
N.D.
+0.1
N.D.
+0.3
carbon source
L-Alanine (C)
+0.4
N.D.
-0.3
N.D.
-0.6
carbon source
D-Sorbitol (C)
-0.6
N.D.
-0.3
N.D.
+0.4
carbon source
pyruvate (C)
-0.8
N.D.
+0.3
N.D.
-0.0
carbon source
L-Phenylalanine (C)
-0.8
N.D.
+0.2
N.D.
+0.2
phage
V2_100
-1.0
N.D.
+0.5
N.D.
+0.2
carbon source
Gly-Glu (C)
-0.7
N.D.
+0.2
N.D.
+0.2
carbon source
propionate (C)
-0.7
N.D.
+0.4
N.D.
+0.2
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