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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS27220 and ABID97_RS27225 are separated by 240 nucleotides
ABID97_RS27225 and ABID97_RS27230 are separated by 50 nucleotides
ABID97_RS27230 and ABID97_RS27235 are separated by 87 nucleotides
ABID97_RS27235 and ABID97_RS27240 are separated by 142 nucleotides
ABID97_RS27220: ABID97_RS27220 - serine hydrolase domain-containing protein, at 359,798 to 361,687
_RS27220
ABID97_RS27225: ABID97_RS27225 - ester cyclase, at 361,928 to 362,347
_RS27225
ABID97_RS27230: ABID97_RS27230 - dihydrofolate reductase family protein, at 362,398 to 362,976
_RS27230
ABID97_RS27235: ABID97_RS27235 - hypothetical protein, at 363,064 to 363,306
_RS27235
ABID97_RS27240: ABID97_RS27240 - hypothetical protein, at 363,449 to 363,802
_RS27240
Group
Condition
ABID97
_RS27220
ABID97
_RS27225
ABID97
_RS27230
ABID97
_RS27235
ABID97
_RS27240
carbon source
D,L-Malic Acid (C)
-1.1
N.D.
N.D.
-1.8
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-0.5
N.D.
N.D.
-2.3
N.D.
carbon source
L-Alanine (C)
+0.1
N.D.
N.D.
-2.2
N.D.
carbon source
Fumarate (C)
-0.0
N.D.
N.D.
-1.8
N.D.
phage
V2_1
-0.1
N.D.
N.D.
-1.6
N.D.
carbon source
D-Arabinose (C)
-0.2
N.D.
N.D.
-1.5
N.D.
phage
V2_100
-0.2
N.D.
N.D.
-1.5
N.D.
carbon source
D-Serine (C)
-0.5
N.D.
N.D.
-0.9
N.D.
carbon source
casaminos (C)
-0.4
N.D.
N.D.
-1.0
N.D.
carbon source
D-Xylose (C)
-0.0
N.D.
N.D.
-1.2
N.D.
phage
V1_10
-0.4
N.D.
N.D.
-0.7
N.D.
carbon source
Ethanol (C)
-0.2
N.D.
N.D.
-1.0
N.D.
carbon source
Formate (C)
-0.2
N.D.
N.D.
-0.9
N.D.
carbon source
D-Gluconic Acid (C)
-0.1
N.D.
N.D.
-1.0
N.D.
carbon source
Formate (C)
-0.3
N.D.
N.D.
-0.7
N.D.
carbon source
D-Serine (C)
-0.7
N.D.
N.D.
-0.3
N.D.
carbon source
L-Threonine (C)
-0.6
N.D.
N.D.
-0.4
N.D.
phage
V2_10
-0.3
N.D.
N.D.
-0.6
N.D.
carbon source
D-Ribose (C)
-0.3
N.D.
N.D.
-0.5
N.D.
phage
V1_10
+0.0
N.D.
N.D.
-0.9
N.D.
carbon source
butyrate (C)
+0.6
N.D.
N.D.
-0.8
N.D.
carbon source
L-tyrosine (C)
-0.7
N.D.
N.D.
+0.5
N.D.
carbon source
L-tyrosine (C)
+0.7
N.D.
N.D.
-0.7
N.D.
carbon source
L-Fucose (C)
-0.4
N.D.
N.D.
+0.8
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.2
N.D.
N.D.
+0.8
N.D.
carbon source
D-Arabinose (C)
-0.2
N.D.
N.D.
+0.8
N.D.
carbon source
L-Tryptophan (C)
+0.4
N.D.
N.D.
+0.7
N.D.
carbon source
Glucuronamide (C)
+0.5
N.D.
N.D.
+0.9
N.D.
carbon source
Glucuronamide (C)
+0.3
N.D.
N.D.
+1.2
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.1
N.D.
N.D.
+2.1
N.D.
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