Fitness for 5 genes in Variovorax sp. OAS795

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 111 experiments or choose conditions or try the comparative fitness browser

500 ntABID97_RS26685 and ABID97_RS26690 are separated by 142 nucleotidesABID97_RS26690 and ABID97_RS26695 are separated by 46 nucleotidesABID97_RS26695 and ABID97_RS26700 are separated by 95 nucleotidesABID97_RS26700 and ABID97_RS26705 overlap by 4 nucleotides ABID97_RS26685: ABID97_RS26685 - LysR substrate-binding domain-containing protein, at 260,399 to 261,334 _RS26685 ABID97_RS26690: ABID97_RS26690 - tripartite tricarboxylate transporter substrate binding protein, at 261,477 to 262,490 _RS26690 ABID97_RS26695: ABID97_RS26695 - M81 family metallopeptidase, at 262,537 to 264,027 _RS26695 ABID97_RS26700: ABID97_RS26700 - Ku protein, at 264,123 to 265,064 _RS26700 ABID97_RS26705: ABID97_RS26705 - tetratricopeptide repeat protein, at 265,061 to 265,903 _RS26705
Group Condition ABID97_RS26685 ABID97_RS26690 ABID97_RS26695 ABID97_RS26700 ABID97_RS26705
phage V2_10 -0.7 +0.0 -0.7 -0.2 +0.0
carbon source D-Mannose (C) -0.2 -0.5 -0.1 -0.2 -0.3
carbon source L-Histidine (C) -0.6 +0.1 +0.1 -0.0 -0.6
phage V1_10 -0.6 -0.2 -0.2 +0.1 -0.1
carbon source Glucuronamide (C) -0.2 -0.5 -0.3 -0.1 +0.1
carbon source butyrate (C) -0.9 -0.2 -0.1 -0.0 +0.5
carbon source Adenine (C) -1.0 -0.0 +0.2 -0.1 -0.0
carbon source D-Galactose (C) -0.6 -0.1 -0.1 +0.2 -0.2
phage V1_10 -0.8 +0.3 -0.3 -0.0 -0.0
carbon source L-Arabinose (C) -1.0 +0.6 -0.1 -0.0 -0.2
carbon source Glucuronamide (C) -0.5 -0.2 +0.1 -0.2 +0.1
carbon source L-tyrosine (C) +0.5 -0.2 -0.3 +0.1 -0.7
carbon source D-Sorbitol (C) -0.4 -0.3 +0.2 +0.3 -0.1
r2a outgrowth control R2A outgrowth control +0.6 -1.0 -0.1 -0.2 +0.4
phage V2_10 +0.1 -0.5 +0.2 -0.2 +0.2
r2a outgrowth control R2A outgrowth control +0.7 -0.7 +0.1 -0.2 -0.1
carbon source Formate (C) -0.2 +0.6 -0.5 +0.0 +0.1
carbon source D-Glucose (C) +0.3 +0.2 -0.3 +0.1 -0.3
carbon source D,L-Lactate (C) -0.5 +0.4 -0.1 -0.0 +0.3
carbon source L-tyrosine (C) -1.2 +0.7 +0.3 +0.0 +0.1
carbon source Fumarate (C) -0.5 +0.2 +0.3 -0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.1 -0.6 -0.3 +0.2
carbon source butyrate (C) +0.2 +0.3 -0.3 -0.2 +0.4
carbon source D-Gluconic Acid (C) +0.2 +0.7 -0.2 +0.2 -0.3
carbon source Glycerol (C) -0.2 +0.7 +0.1 +0.1 -0.1
carbon source L-Phenylalanine (C) +0.3 +0.6 -0.0 +0.1 -0.2
carbon source propionate (C) -0.1 -0.2 +1.2 -0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.2 -0.4 -0.0 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.8 +0.3 +0.2 -0.1
carbon source propionate (C) +0.1 +0.3 +1.9 -0.1 +0.1
remove
ABID97_RS26685
plot		 remove
ABID97_RS26690
plot		 remove
ABID97_RS26695		 remove
ABID97_RS26700
plot		 remove
ABID97_RS26705
plot