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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS26075 and ABID97_RS26080 are separated by 43 nucleotides
ABID97_RS26080 and ABID97_RS26085 overlap by 4 nucleotides
ABID97_RS26085 and ABID97_RS26090 are separated by 232 nucleotides
ABID97_RS26090 and ABID97_RS26095 are separated by 142 nucleotides
ABID97_RS26075: ABID97_RS26075 - hypothetical protein, at 139,379 to 140,083
_RS26075
ABID97_RS26080: ABID97_RS26080 - LytTR family DNA-binding domain-containing protein, at 140,127 to 140,921
_RS26080
ABID97_RS26085: ABID97_RS26085 - histidine kinase, at 140,918 to 141,982
_RS26085
ABID97_RS26090: ABID97_RS26090 - homoserine O-acetyltransferase, at 142,215 to 143,396
_RS26090
ABID97_RS26095: ABID97_RS26095 - SRPBCC family protein, at 143,539 to 143,988
_RS26095
Group
Condition
ABID97
_RS26075
ABID97
_RS26080
ABID97
_RS26085
ABID97
_RS26090
ABID97
_RS26095
carbon source
Glucuronamide (C)
+0.1
-0.9
-0.3
-0.3
-0.3
carbon source
Glycolic Acid (C)
-0.7
+0.1
-0.4
-0.3
-0.3
carbon source
D-Glucose (C)
+0.0
-0.6
-0.6
+0.2
-0.3
phage
V2_100
-0.2
+0.1
-0.6
-0.5
+0.3
carbon source
butyrate (C)
+0.8
-0.6
-0.4
-0.4
-0.2
plant outgrowth control
Plant outgrowth control
+0.5
-0.0
-0.3
-0.2
-0.3
carbon source
L-Threonine (C)
+0.4
-0.7
+0.3
-0.1
-0.1
phage
V2_1
-0.5
-0.1
-0.4
+0.3
+0.4
carbon source
L-Malic (C)
-0.9
+0.1
+0.3
+0.0
+0.2
carbon source
D-Ribose (C)
-0.2
+0.3
-0.2
-0.5
+0.5
carbon source
L-Alanine (C)
+0.1
+0.0
-1.2
+0.7
+0.4
carbon source
D-Glucose (C)
+0.1
-0.2
-0.5
+0.1
+0.6
phage
V2_10
+0.7
-0.1
-0.6
-0.0
+0.2
carbon source
L-Histidine (C)
+0.3
+0.4
-0.7
+0.2
+0.1
carbon source
butyrate (C)
+0.7
-0.9
+0.5
-0.2
-0.0
carbon source
L-tyrosine (C)
+0.4
+0.8
+0.2
-0.7
-0.5
carbon source
L-Phenylalanine (C)
+0.4
-0.6
+0.0
+0.2
+0.4
carbon source
2-Deoxy-D-Ribose (C)
+0.6
-0.6
-0.1
+0.3
+0.3
plant outgrowth control
Plant outgrowth control
+0.3
+0.4
-0.3
+0.4
-0.3
phage
V1_1
+0.3
+0.5
-0.2
+0.2
-0.3
carbon source
pyruvate (C)
+0.7
-0.3
-0.1
-0.2
+0.5
carbon source
Adenine (C)
+0.1
-0.2
+0.6
-0.3
+0.4
phage
V2_10
+0.8
+0.2
-0.4
-0.2
+0.4
carbon source
D-Gluconic Acid (C)
+0.8
-0.6
+0.1
+0.4
+0.0
carbon source
L-Phenylalanine (C)
+0.5
-0.4
-0.0
+0.3
+0.5
carbon source
L-tyrosine (C)
-0.2
+0.4
+0.3
-0.1
+0.5
carbon source
Gly-Glu (C)
+0.1
+0.3
-0.2
+0.5
+0.3
carbon source
L-Glutamine (C)
+0.4
+0.1
-0.2
+0.2
+0.7
carbon source
L-Asparagine (C)
+0.6
+0.1
+0.6
-0.2
+0.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+1.0
+0.9
-1.0
+0.3
+0.2
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