Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS25670 and ABID97_RS25675 are separated by 196 nucleotidesABID97_RS25675 and ABID97_RS25680 are separated by 45 nucleotidesABID97_RS25680 and ABID97_RS25685 are separated by 75 nucleotidesABID97_RS25685 and ABID97_RS25690 are separated by 29 nucleotides ABID97_RS25670: ABID97_RS25670 - sulfite exporter TauE/SafE family protein, at 53,120 to 53,902 _RS25670 ABID97_RS25675: ABID97_RS25675 - beta-1,6-N-acetylglucosaminyltransferase, at 54,099 to 54,983 _RS25675 ABID97_RS25680: ABID97_RS25680 - LysR family transcriptional regulator, at 55,029 to 55,916 _RS25680 ABID97_RS25685: ABID97_RS25685 - four-carbon acid sugar kinase family protein, at 55,992 to 57,059 _RS25685 ABID97_RS25690: ABID97_RS25690 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 57,089 to 58,051 _RS25690
Group Condition ABID97_RS25670 ABID97_RS25675 ABID97_RS25680 ABID97_RS25685 ABID97_RS25690
carbon source L-tyrosine (C) N.D. -0.1 -0.1 -1.1 -3.3
carbon source L-Alanine (C) N.D. -0.2 -0.5 -0.9 -2.1
carbon source D-Galactose (C) N.D. -0.2 -0.4 -0.4 -2.7
carbon source D,L-Malic Acid (C) N.D. -0.1 +0.2 -0.6 -2.7
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.2 -0.3 -0.3 -1.9
carbon source Fumarate (C) N.D. -0.1 -0.1 -0.6 -1.7
carbon source Formate (C) N.D. -0.2 +0.1 -0.4 -2.0
carbon source Glycerol (C) N.D. +0.2 -0.1 -0.5 -1.7
carbon source acetate (C) N.D. +0.1 +0.3 -0.1 -2.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.4 +0.2 -0.3 -1.2
carbon source L-Asparagine (C) N.D. -0.2 -0.3 -0.9 -0.3
carbon source D-Ribose (C) N.D. -0.1 -0.2 -0.7 -0.6
carbon source L-Glutamine (C) N.D. -0.1 -0.3 -0.2 -1.0
carbon source pyruvate (C) N.D. -0.2 -0.2 -0.3 -0.9
carbon source L-Glutamic (C) N.D. -0.1 -0.4 +0.1 -1.1
carbon source L-Lactate (C) N.D. -0.1 -0.4 -0.2 -0.9
carbon source L-Malic (C) N.D. -0.2 -0.3 -0.2 -0.7
carbon source L-Glutamine (C) N.D. +0.1 -0.0 -0.5 -1.0
carbon source Tween 20 (C) N.D. -0.1 +0.0 -0.2 -1.1
phage V2_100 N.D. -0.1 -0.2 +0.3 -1.4
carbon source Fumarate (C) N.D. -0.0 +0.1 -0.6 -0.8
carbon source L-Fucose (C) N.D. +0.1 +0.1 -0.2 -1.2
carbon source D-Serine (C) N.D. -0.1 +0.3 -0.2 -1.2
carbon source succinate (C) N.D. -0.2 +0.2 -0.3 -0.8
carbon source Ethanol (C) N.D. -0.4 -0.4 -0.6 +0.4
carbon source Glucuronamide (C) N.D. +0.1 +0.4 -0.4 -0.7
carbon source D-Glucuronic Acid (C) N.D. -0.0 -0.0 -0.8 +0.9
carbon source casaminos (C) N.D. -0.1 -0.4 -0.1 +0.8
carbon source propionate (C) N.D. +0.1 +0.5 +0.4 -0.8
phage V1_10 N.D. +0.2 +0.3 +0.8 -0.2
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ABID97_RS25670
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ABID97_RS25675
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ABID97_RS25690
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