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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS25645 and ABID97_RS25650 are separated by 20 nucleotides
ABID97_RS25650 and ABID97_RS25655 are separated by 41 nucleotides
ABID97_RS25655 and ABID97_RS25660 are separated by 47 nucleotides
ABID97_RS25660 and ABID97_RS25665 overlap by 4 nucleotides
ABID97_RS25645: ABID97_RS25645 - L-arabinonate dehydratase, at 47,816 to 49,543
_RS25645
ABID97_RS25650: ABID97_RS25650 - ribonuclease activity regulator RraA, at 49,564 to 50,274
_RS25650
ABID97_RS25655: ABID97_RS25655 - tripartite tricarboxylate transporter substrate binding protein, at 50,316 to 51,311
_RS25655
ABID97_RS25660: ABID97_RS25660 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 51,359 to 52,276
_RS25660
ABID97_RS25665: ABID97_RS25665 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 52,273 to 53,016
_RS25665
Group
Condition
ABID97
_RS25645
ABID97
_RS25650
ABID97
_RS25655
ABID97
_RS25660
ABID97
_RS25665
carbon source
D-Ribose (C)
-0.1
-0.5
-0.0
-0.7
N.D.
carbon source
D,L-Lactate (C)
-0.4
-0.2
-0.2
-0.5
N.D.
carbon source
L-Histidine (C)
-0.1
-0.1
+0.1
-0.9
N.D.
carbon source
L-Threonine (C)
-0.3
-0.1
+0.1
-0.8
N.D.
carbon source
D,L-Malic Acid (C)
-0.6
+0.2
-0.1
-0.5
N.D.
carbon source
propionate (C)
-0.3
+0.2
-0.1
-0.6
N.D.
carbon source
L-Glutamine (C)
-0.1
+0.2
-0.0
-0.9
N.D.
carbon source
Glycolic Acid (C)
+0.0
+0.3
-0.3
-0.7
N.D.
carbon source
D-Serine (C)
-0.3
+0.6
-0.2
-0.8
N.D.
carbon source
L-Fucose (C)
-0.2
+0.4
-0.2
-0.5
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.1
+0.4
-0.1
-0.6
N.D.
carbon source
Tween 20 (C)
-0.3
+0.8
-0.0
-0.8
N.D.
carbon source
L-Leucine (C)
-0.1
+0.5
+0.1
-0.7
N.D.
carbon source
D-Glucose (C)
-0.3
+0.6
+0.0
-0.5
N.D.
carbon source
butyrate (C)
-0.4
+0.5
+0.2
-0.4
N.D.
carbon source
Glucuronamide (C)
-0.4
+0.1
-0.3
+0.5
N.D.
carbon source
L-Glutamic (C)
-0.3
+0.6
+0.0
-0.4
N.D.
carbon source
L-Arabinose (C)
-0.3
+0.6
+0.0
-0.4
N.D.
carbon source
L-Fucose (C)
-0.3
+0.5
-0.3
+0.1
N.D.
carbon source
Glucuronamide (C)
-0.3
+0.4
-0.3
+0.2
N.D.
phage
V2_100
-0.1
+0.9
+0.4
-1.2
N.D.
r2a outgrowth control
R2A outgrowth control
+0.6
-0.3
+0.1
-0.1
N.D.
phage
V2_10
+0.2
+0.3
+0.5
-0.6
N.D.
carbon source
D-Glucuronic Acid (C)
-0.3
+1.8
-0.4
+0.1
N.D.
carbon source
L-Tryptophan (C)
+0.1
+0.8
+0.0
+0.2
N.D.
carbon source
L-Alanine (C)
+0.9
+0.5
+0.2
-0.3
N.D.
carbon source
L-Alanine (C)
+2.2
+0.0
-0.5
-0.4
N.D.
phage
V2_10
+0.3
+0.6
+0.4
+0.5
N.D.
carbon source
L-tyrosine (C)
-0.4
+0.6
+0.3
+1.2
N.D.
carbon source
Gly-Glu (C)
-0.0
+1.0
+0.2
+0.7
N.D.
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