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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS25630 and ABID97_RS25635 are separated by 79 nucleotides
ABID97_RS25635 and ABID97_RS25640 are separated by 45 nucleotides
ABID97_RS25640 and ABID97_RS25645 are separated by 82 nucleotides
ABID97_RS25645 and ABID97_RS25650 are separated by 20 nucleotides
ABID97_RS25630: ABID97_RS25630 - HupE/UreJ family protein, at 45,279 to 46,430
_RS25630
ABID97_RS25635: ABID97_RS25635 - nickel-responsive transcriptional regulator NikR, at 46,510 to 46,992
_RS25635
ABID97_RS25640: ABID97_RS25640 - GntR family transcriptional regulator, at 47,038 to 47,733
_RS25640
ABID97_RS25645: ABID97_RS25645 - L-arabinonate dehydratase, at 47,816 to 49,543
_RS25645
ABID97_RS25650: ABID97_RS25650 - ribonuclease activity regulator RraA, at 49,564 to 50,274
_RS25650
Group
Condition
ABID97
_RS25630
ABID97
_RS25635
ABID97
_RS25640
ABID97
_RS25645
ABID97
_RS25650
carbon source
D-Galactose (C)
-2.0
+0.1
-0.1
+0.1
-0.2
carbon source
Glycerol (C)
-1.4
+0.0
-0.4
-0.2
+0.4
carbon source
D-Glucose (C)
-1.2
-0.1
-0.2
-0.1
+0.2
carbon source
D,L-Malic Acid (C)
+0.2
-0.2
-0.9
-0.6
+0.2
carbon source
L-Phenylalanine (C)
+0.3
-0.4
-0.7
+0.2
-0.4
carbon source
D,L-Malic Acid (C)
+0.6
-0.1
-0.7
-0.4
-0.3
carbon source
D,L-Lactate (C)
-0.2
-0.3
-0.6
-0.1
+0.5
carbon source
L-Fucose (C)
-0.0
-0.4
-0.4
-0.3
+0.5
phage
V1_10
-0.7
-0.7
+0.2
+0.3
+0.5
carbon source
Glucuronamide (C)
-0.6
-0.0
+0.5
-0.3
+0.4
carbon source
Tween 20 (C)
-0.3
+0.3
-0.3
-0.3
+0.8
carbon source
L-Arabinose (C)
+0.4
+0.0
-0.4
-0.3
+0.6
carbon source
D-Serine (C)
+0.5
+0.1
-0.3
-0.4
+0.4
carbon source
Gly-Glu (C)
+0.5
-0.1
-0.5
-0.1
+0.5
carbon source
L-tyrosine (C)
+0.5
-0.5
+0.1
-0.4
+0.6
carbon source
D-Glucuronic Acid (C)
-0.2
+0.3
-1.2
-0.3
+1.8
phage
V2_100
-0.4
-0.2
+0.1
-0.1
+0.9
phage
V1_1
+0.7
-0.5
-0.1
+0.1
+0.3
carbon source
D-Arabinose (C)
+0.9
-0.4
+0.0
-0.3
+0.3
carbon source
L-Histidine (C)
+0.5
+1.0
-0.6
-0.1
-0.1
carbon source
L-Threonine (C)
+0.7
-0.3
-0.2
+0.1
+0.5
carbon source
Gly-Glu (C)
+0.3
+0.0
-0.4
-0.0
+1.0
carbon source
L-Alanine (C)
-0.9
+0.3
+0.1
+0.9
+0.5
carbon source
D-Serine (C)
+0.7
+0.3
-0.5
-0.3
+0.6
carbon source
2-Deoxy-D-Ribose (C)
+0.4
+0.5
-0.3
-0.1
+0.4
carbon source
D-Lactate (C)
+0.7
+0.4
-0.4
+0.1
+0.3
carbon source
D-Glucose (C)
+0.7
+0.3
-0.2
-0.3
+0.6
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.7
+0.2
-0.1
+0.6
-0.1
carbon source
butyrate (C)
+0.4
+0.3
+0.3
+0.4
+0.4
carbon source
L-Alanine (C)
-0.4
+0.0
+0.1
+2.2
+0.0
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