Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS25630 and ABID97_RS25635 are separated by 79 nucleotidesABID97_RS25635 and ABID97_RS25640 are separated by 45 nucleotidesABID97_RS25640 and ABID97_RS25645 are separated by 82 nucleotidesABID97_RS25645 and ABID97_RS25650 are separated by 20 nucleotides ABID97_RS25630: ABID97_RS25630 - HupE/UreJ family protein, at 45,279 to 46,430 _RS25630 ABID97_RS25635: ABID97_RS25635 - nickel-responsive transcriptional regulator NikR, at 46,510 to 46,992 _RS25635 ABID97_RS25640: ABID97_RS25640 - GntR family transcriptional regulator, at 47,038 to 47,733 _RS25640 ABID97_RS25645: ABID97_RS25645 - L-arabinonate dehydratase, at 47,816 to 49,543 _RS25645 ABID97_RS25650: ABID97_RS25650 - ribonuclease activity regulator RraA, at 49,564 to 50,274 _RS25650
Group Condition ABID97_RS25630 ABID97_RS25635 ABID97_RS25640 ABID97_RS25645 ABID97_RS25650
carbon source D-Galactose (C) -2.0 +0.1 -0.1 +0.1 -0.2
carbon source Glycerol (C) -1.4 +0.0 -0.4 -0.2 +0.4
carbon source D-Glucose (C) -1.2 -0.1 -0.2 -0.1 +0.2
carbon source D,L-Malic Acid (C) +0.2 -0.2 -0.9 -0.6 +0.2
carbon source L-Phenylalanine (C) +0.3 -0.4 -0.7 +0.2 -0.4
carbon source D,L-Malic Acid (C) +0.6 -0.1 -0.7 -0.4 -0.3
carbon source D,L-Lactate (C) -0.2 -0.3 -0.6 -0.1 +0.5
carbon source L-Fucose (C) -0.0 -0.4 -0.4 -0.3 +0.5
phage V1_10 -0.7 -0.7 +0.2 +0.3 +0.5
carbon source Glucuronamide (C) -0.6 -0.0 +0.5 -0.3 +0.4
carbon source Tween 20 (C) -0.3 +0.3 -0.3 -0.3 +0.8
carbon source L-Arabinose (C) +0.4 +0.0 -0.4 -0.3 +0.6
carbon source D-Serine (C) +0.5 +0.1 -0.3 -0.4 +0.4
carbon source Gly-Glu (C) +0.5 -0.1 -0.5 -0.1 +0.5
carbon source L-tyrosine (C) +0.5 -0.5 +0.1 -0.4 +0.6
carbon source D-Glucuronic Acid (C) -0.2 +0.3 -1.2 -0.3 +1.8
phage V2_100 -0.4 -0.2 +0.1 -0.1 +0.9
phage V1_1 +0.7 -0.5 -0.1 +0.1 +0.3
carbon source D-Arabinose (C) +0.9 -0.4 +0.0 -0.3 +0.3
carbon source L-Histidine (C) +0.5 +1.0 -0.6 -0.1 -0.1
carbon source L-Threonine (C) +0.7 -0.3 -0.2 +0.1 +0.5
carbon source Gly-Glu (C) +0.3 +0.0 -0.4 -0.0 +1.0
carbon source L-Alanine (C) -0.9 +0.3 +0.1 +0.9 +0.5
carbon source D-Serine (C) +0.7 +0.3 -0.5 -0.3 +0.6
carbon source 2-Deoxy-D-Ribose (C) +0.4 +0.5 -0.3 -0.1 +0.4
carbon source D-Lactate (C) +0.7 +0.4 -0.4 +0.1 +0.3
carbon source D-Glucose (C) +0.7 +0.3 -0.2 -0.3 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.2 -0.1 +0.6 -0.1
carbon source butyrate (C) +0.4 +0.3 +0.3 +0.4 +0.4
carbon source L-Alanine (C) -0.4 +0.0 +0.1 +2.2 +0.0
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