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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS25575 and ABID97_RS25580 overlap by 38 nucleotides
ABID97_RS25580 and ABID97_RS25585 are separated by 240 nucleotides
ABID97_RS25585 and ABID97_RS25590 are separated by 12 nucleotides
ABID97_RS25590 and ABID97_RS25595 overlap by 20 nucleotides
ABID97_RS25575: ABID97_RS25575 - LysR family transcriptional regulator, at 35,159 to 36,034
_RS25575
ABID97_RS25580: ABID97_RS25580 - nucleotidyltransferase family protein, at 35,997 to 36,596
_RS25580
ABID97_RS25585: ABID97_RS25585 - DUF6662 family protein, at 36,837 to 37,754
_RS25585
ABID97_RS25590: ABID97_RS25590 - FMN-binding protein, at 37,767 to 38,282
_RS25590
ABID97_RS25595: ABID97_RS25595 - FAD:protein FMN transferase, at 38,263 to 39,168
_RS25595
Group
Condition
ABID97
_RS25575
ABID97
_RS25580
ABID97
_RS25585
ABID97
_RS25590
ABID97
_RS25595
r2a outgrowth control
R2A outgrowth control
-0.2
-0.3
-0.3
-0.6
-1.0
phage
V1_10
+0.2
-1.3
-0.0
-0.4
-0.3
carbon source
L-Histidine (C)
-0.1
-2.1
-0.1
-0.3
+0.7
r2a outgrowth control
R2A outgrowth control
-0.1
-1.8
-0.0
+0.3
-0.3
carbon source
Glycerol (C)
-0.0
-0.8
+0.1
-0.1
-0.8
carbon source
a-Ketoglutaric (C)
-0.2
-0.7
-0.1
+0.1
-0.8
carbon source
L-Glutamic (C)
-0.1
-0.5
-0.3
-0.2
-0.6
carbon source
Adenine (C)
+0.1
-0.9
-0.1
-0.3
-0.4
carbon source
L-Leucine (C)
+0.0
-0.7
-0.1
-0.2
-0.7
phage
V1_1
+0.2
-0.8
+0.1
-0.1
-1.0
carbon source
D-Ribose (C)
+0.1
-0.3
-0.1
-0.6
-0.5
carbon source
D-Serine (C)
-0.2
-0.5
+0.1
-0.4
-0.5
carbon source
D,L-Malic Acid (C)
-0.3
+0.5
+0.3
+0.4
-2.1
carbon source
D-Glucose (C)
-0.3
+0.5
-0.2
-0.1
-1.0
carbon source
D-Sorbitol (C)
-0.1
-0.3
-0.0
+0.4
-0.8
carbon source
L-Alanine (C)
-0.1
+0.6
+0.0
+0.2
-1.5
carbon source
L-tyrosine (C)
+0.0
-1.2
+0.5
-0.1
+0.1
carbon source
D-Arabinose (C)
-0.2
+0.1
+0.4
+0.1
-0.8
carbon source
butyrate (C)
-0.1
-1.0
+0.2
+0.1
+0.7
phage
V2_1
+0.3
-0.5
+0.1
+0.4
-0.4
carbon source
L-tyrosine (C)
-0.3
+0.6
+0.0
-0.5
+0.3
carbon source
D-Lactate (C)
+0.1
+0.7
-0.0
+0.1
-0.7
phage
V2_100
+0.0
-0.9
+0.3
+0.1
+0.6
carbon source
Glycolic Acid (C)
-0.4
+0.1
-0.4
-0.1
+1.0
carbon source
L-Histidine (C)
-0.3
-0.5
-0.1
+0.4
+0.7
carbon source
D-Gluconic Acid (C)
-0.1
-0.5
-0.1
+0.1
+1.0
carbon source
L-Alanine (C)
-0.3
+1.1
+0.0
+0.1
-0.3
carbon source
propionate (C)
-0.0
-0.3
-0.2
+0.4
+0.8
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
+0.2
-0.1
-0.3
+1.0
carbon source
L-Arabinose (C)
-0.0
-0.3
+0.0
-0.0
+1.3
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