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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS25465 and ABID97_RS25470 are separated by 9 nucleotides
ABID97_RS25470 and ABID97_RS25475 are separated by 219 nucleotides
ABID97_RS25475 and ABID97_RS25480 are separated by 102 nucleotides
ABID97_RS25480 and ABID97_RS25485 are separated by 5 nucleotides
ABID97_RS25465: ABID97_RS25465 - VOC family protein, at 11,206 to 12,132
_RS25465
ABID97_RS25470: ABID97_RS25470 - NIPSNAP family protein, at 12,142 to 12,456
_RS25470
ABID97_RS25475: ABID97_RS25475 - LysR family transcriptional regulator, at 12,676 to 13,569
_RS25475
ABID97_RS25480: ABID97_RS25480 - NAD(P)-dependent oxidoreductase, at 13,672 to 14,586
_RS25480
ABID97_RS25485: ABID97_RS25485 - fumarylacetoacetate hydrolase family protein, at 14,592 to 15,548
_RS25485
Group
Condition
ABID97
_RS25465
ABID97
_RS25470
ABID97
_RS25475
ABID97
_RS25480
ABID97
_RS25485
carbon source
L-Arabinose (C)
-0.3
N.D.
+0.2
-0.0
-2.4
carbon source
Formate (C)
-0.3
N.D.
-0.4
+0.2
-1.7
carbon source
D-Serine (C)
-0.4
N.D.
-0.4
-0.5
-0.2
carbon source
Tween 20 (C)
-0.1
N.D.
-0.0
+0.0
-1.2
carbon source
propionate (C)
-0.3
N.D.
-0.1
-0.3
-0.6
carbon source
Glucuronamide (C)
-0.1
N.D.
-0.7
+0.1
-0.5
carbon source
L-Asparagine (C)
-0.2
N.D.
-0.5
-0.2
-0.3
carbon source
D-Ribose (C)
-0.2
N.D.
+0.1
-0.1
-0.9
carbon source
Ethanol (C)
-0.4
N.D.
-0.6
-0.1
-0.0
carbon source
L-tyrosine (C)
-0.5
N.D.
-0.5
-0.2
+0.3
carbon source
D-Ribose (C)
+0.0
N.D.
+0.3
+0.2
-1.4
carbon source
L-Histidine (C)
+0.1
N.D.
+0.8
-0.1
-1.5
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
N.D.
+0.1
+0.1
-0.9
carbon source
Ethanol (C)
-0.3
N.D.
+0.3
-0.0
-0.7
carbon source
succinate (C)
-0.3
N.D.
-0.6
-0.3
+0.5
carbon source
L-Lactate (C)
+0.2
N.D.
-0.0
-0.1
-0.7
carbon source
L-tyrosine (C)
+0.3
N.D.
+0.2
-0.1
-1.0
carbon source
L-Leucine (C)
+0.1
N.D.
+0.2
-0.0
-0.8
carbon source
L-Glutamine (C)
-0.2
N.D.
-0.5
+0.2
+0.2
carbon source
acetate (C)
-0.1
N.D.
+0.4
-0.3
-0.2
carbon source
a-Ketoglutaric (C)
+0.0
N.D.
+0.4
-0.1
-0.5
carbon source
pyruvate (C)
-0.4
N.D.
+0.2
-0.2
+0.3
carbon source
D-Mannose (C)
-0.1
N.D.
+0.6
+0.1
-0.4
carbon source
Glycolic Acid (C)
-0.2
N.D.
+0.2
-0.2
+0.6
phage
V2_10
-0.1
N.D.
-0.0
+0.1
+0.8
carbon source
L-Threonine (C)
+0.1
N.D.
-0.0
-0.0
+1.0
phage
V1_1
-0.1
N.D.
+0.3
-0.1
+0.9
carbon source
D-Lactate (C)
+0.2
N.D.
+0.2
+0.1
+0.6
carbon source
D,L-Malic Acid (C)
-0.1
N.D.
+0.3
-0.2
+1.3
phage
V2_100
+0.1
N.D.
+0.4
+0.1
+1.6
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