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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS24960 and ABID97_RS24965 are separated by 156 nucleotides
ABID97_RS24965 and ABID97_RS24970 are separated by 71 nucleotides
ABID97_RS24970 and ABID97_RS24975 are separated by 18 nucleotides
ABID97_RS24975 and ABID97_RS24980 are separated by 109 nucleotides
ABID97_RS24960: ABID97_RS24960 - tyrosine--tRNA ligase, at 5,167,165 to 5,168,397
_RS24960
ABID97_RS24965: ABID97_RS24965 - peptidoglycan DD-metalloendopeptidase family protein, at 5,168,554 to 5,169,897
_RS24965
ABID97_RS24970: ABID97_RS24970 - anhydro-N-acetylmuramic acid kinase, at 5,169,969 to 5,171,099
_RS24970
ABID97_RS24975: ABID97_RS24975 - multidrug transporter subunit MdtD, at 5,171,118 to 5,172,548
_RS24975
ABID97_RS24980: ABID97_RS24980 - iron-sulfur cluster insertion protein ErpA, at 5,172,658 to 5,173,023
_RS24980
Group
Condition
ABID97
_RS24960
ABID97
_RS24965
ABID97
_RS24970
ABID97
_RS24975
ABID97
_RS24980
carbon source
L-Malic (C)
N.D.
-0.7
-0.2
+0.1
N.D.
phage
V2_10
N.D.
-0.3
-0.3
-0.0
N.D.
phage
V2_10
N.D.
-0.4
-0.2
+0.1
N.D.
carbon source
Tween 20 (C)
N.D.
-0.4
+0.1
-0.2
N.D.
phage
V2_1
N.D.
-0.4
-0.2
+0.2
N.D.
carbon source
D-Mannose (C)
N.D.
-0.4
+0.5
-0.0
N.D.
carbon source
Glycerol (C)
N.D.
+0.2
+0.3
-0.2
N.D.
carbon source
D-Mannose (C)
N.D.
-0.1
+0.6
-0.2
N.D.
carbon source
L-Proline (C)
N.D.
+0.2
+0.4
-0.1
N.D.
carbon source
D,L-Malic Acid (C)
N.D.
+0.4
+0.2
-0.1
N.D.
carbon source
casaminos (C)
N.D.
-0.1
+0.4
+0.2
N.D.
carbon source
Ethanol (C)
N.D.
+0.5
+0.1
-0.1
N.D.
carbon source
D-Glucose (C)
N.D.
+0.4
+0.3
-0.1
N.D.
carbon source
D-Sorbitol (C)
N.D.
+0.1
+0.5
-0.1
N.D.
carbon source
D-Gluconic Acid (C)
N.D.
+0.1
+0.5
+0.1
N.D.
carbon source
D-Xylose (C)
N.D.
+0.4
+0.2
+0.0
N.D.
carbon source
Fumarate (C)
N.D.
+0.3
+0.3
+0.0
N.D.
carbon source
D-Arabinose (C)
N.D.
+0.3
+0.3
+0.0
N.D.
carbon source
L-Threonine (C)
N.D.
+0.3
+0.3
+0.0
N.D.
carbon source
L-Proline (C)
N.D.
+0.4
+0.3
+0.1
N.D.
carbon source
L-Tryptophan (C)
N.D.
+0.4
+0.2
+0.1
N.D.
carbon source
casaminos (C)
N.D.
+0.3
+0.4
+0.1
N.D.
r2a outgrowth control
R2A outgrowth control
N.D.
+0.5
+0.3
+0.0
N.D.
carbon source
L-tyrosine (C)
N.D.
+0.2
+0.6
+0.1
N.D.
carbon source
D-Glucose (C)
N.D.
+0.4
+0.4
+0.2
N.D.
carbon source
L-Phenylalanine (C)
N.D.
+0.5
+0.4
+0.1
N.D.
carbon source
L-Phenylalanine (C)
N.D.
+0.5
+0.4
+0.1
N.D.
carbon source
D-Fructose (C)
N.D.
+0.7
+0.6
+0.0
N.D.
carbon source
D-Fructose (C)
N.D.
+0.7
+0.5
+0.0
N.D.
phage
V2_100
N.D.
+0.8
+0.4
+0.1
N.D.
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