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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS24920 and ABID97_RS24925 are separated by 20 nucleotides
ABID97_RS24925 and ABID97_RS24930 are separated by 1 nucleotides
ABID97_RS24930 and ABID97_RS24935 are separated by 0 nucleotides
ABID97_RS24935 and ABID97_RS24940 are separated by 12 nucleotides
ABID97_RS24920: ABID97_RS24920 - Holliday junction branch migration protein RuvA, at 5,161,891 to 5,162,463
_RS24920
ABID97_RS24925: ABID97_RS24925 - PhoH family protein, at 5,162,484 to 5,163,440
_RS24925
ABID97_RS24930: ABID97_RS24930 - rRNA maturation RNase YbeY, at 5,163,442 to 5,163,903
_RS24930
ABID97_RS24935: ABID97_RS24935 - class I SAM-dependent methyltransferase, at 5,163,904 to 5,164,527
_RS24935
ABID97_RS24940: ABID97_RS24940 - D-aminoacyl-tRNA deacylase, at 5,164,540 to 5,164,983
_RS24940
Group
Condition
ABID97
_RS24920
ABID97
_RS24925
ABID97
_RS24930
ABID97
_RS24935
ABID97
_RS24940
carbon source
L-Histidine (C)
-4.0
-0.5
N.D.
-0.3
-0.2
carbon source
L-Histidine (C)
-3.9
-0.8
N.D.
-0.2
+0.0
carbon source
L-Fucose (C)
-4.4
-0.3
N.D.
+0.1
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-4.2
-0.7
N.D.
+0.0
-0.0
carbon source
Fumarate (C)
-4.3
-0.4
N.D.
-0.0
-0.1
carbon source
D-Gluconic Acid (C)
-4.2
-0.1
N.D.
-0.3
+0.0
carbon source
L-Arabinose (C)
-4.1
-0.3
N.D.
+0.2
-0.1
carbon source
D-Galactose (C)
-3.3
-1.0
N.D.
-0.2
+0.1
carbon source
acetate (C)
-4.1
-0.0
N.D.
-0.1
+0.1
carbon source
Gly-Glu (C)
-3.2
-0.5
N.D.
-0.1
+0.0
carbon source
Gly-Glu (C)
-3.3
-0.3
N.D.
-0.1
+0.0
carbon source
pyruvate (C)
-3.2
-0.3
N.D.
-0.1
-0.1
carbon source
L-Leucine (C)
-3.2
-0.3
N.D.
-0.1
+0.1
carbon source
Ethanol (C)
-3.1
-0.6
N.D.
+0.2
-0.0
carbon source
L-Proline (C)
-3.1
-0.3
N.D.
-0.2
+0.1
carbon source
D-Lactate (C)
-3.2
-0.3
N.D.
+0.1
-0.0
carbon source
D-Xylose (C)
-2.7
-0.5
N.D.
-0.1
-0.1
carbon source
D-Arabinose (C)
-3.3
-0.3
N.D.
+0.0
+0.1
carbon source
D-Ribose (C)
-3.1
-0.2
N.D.
-0.0
-0.2
carbon source
D-Ribose (C)
-2.9
-0.2
N.D.
-0.2
-0.1
carbon source
Tween 20 (C)
-3.1
-0.1
N.D.
-0.3
+0.1
carbon source
D-Mannose (C)
-3.0
-0.2
N.D.
-0.1
-0.1
carbon source
D,L-Malic Acid (C)
-3.2
-0.4
N.D.
+0.1
+0.1
carbon source
L-Tryptophan (C)
-3.0
-0.3
N.D.
+0.0
+0.0
carbon source
2-Deoxy-D-Ribose (C)
-3.0
-0.4
N.D.
+0.1
+0.1
carbon source
D-Glucuronic Acid (C)
-2.7
-0.3
N.D.
-0.2
+0.3
carbon source
butyrate (C)
-3.2
+0.3
N.D.
-0.1
-0.1
carbon source
casaminos (C)
-2.8
+0.3
N.D.
-0.2
-0.2
carbon source
D-Arabinose (C)
-2.4
-0.6
N.D.
+0.1
+0.1
phage
V2_100
+2.2
-1.0
N.D.
-0.0
-0.2
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