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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS24765 and ABID97_RS24770 are separated by 25 nucleotides
ABID97_RS24770 and ABID97_RS24775 overlap by 4 nucleotides
ABID97_RS24775 and ABID97_RS24780 overlap by 4 nucleotides
ABID97_RS24780 and ABID97_RS24785 are separated by 12 nucleotides
ABID97_RS24765: ABID97_RS24765 - ABC transporter permease, at 5,133,631 to 5,134,626
_RS24765
ABID97_RS24770: ABID97_RS24770 - LacI family DNA-binding transcriptional regulator, at 5,134,652 to 5,135,743
_RS24770
ABID97_RS24775: ABID97_RS24775 - ribokinase, at 5,135,740 to 5,136,708
_RS24775
ABID97_RS24780: ABID97_RS24780 - D-ribose pyranase, at 5,136,705 to 5,137,097
_RS24780
ABID97_RS24785: ABID97_RS24785 - MOSC N-terminal beta barrel domain-containing protein, at 5,137,110 to 5,137,991
_RS24785
Group
Condition
ABID97
_RS24765
ABID97
_RS24770
ABID97
_RS24775
ABID97
_RS24780
ABID97
_RS24785
carbon source
D-Ribose (C)
-2.4
-3.3
N.D.
N.D.
-0.4
carbon source
D-Ribose (C)
-1.9
-3.0
N.D.
N.D.
+0.0
carbon source
L-Alanine (C)
-0.2
-1.8
N.D.
N.D.
-0.4
carbon source
L-Arabinose (C)
+0.1
-1.8
N.D.
N.D.
-0.5
carbon source
L-Alanine (C)
-0.5
-1.4
N.D.
N.D.
-0.3
carbon source
L-Arabinose (C)
+0.0
-2.0
N.D.
N.D.
-0.1
carbon source
Glycerol (C)
-0.1
-1.3
N.D.
N.D.
-0.5
carbon source
Gly-Glu (C)
+0.1
-1.2
N.D.
N.D.
-0.7
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
-0.9
N.D.
N.D.
-0.5
carbon source
D,L-Malic Acid (C)
-0.3
-0.4
N.D.
N.D.
-0.8
carbon source
Fumarate (C)
-0.5
-0.5
N.D.
N.D.
-0.6
carbon source
Glycerol (C)
+0.0
-1.4
N.D.
N.D.
-0.2
carbon source
Gly-Glu (C)
-0.1
-1.1
N.D.
N.D.
-0.4
carbon source
D-Arabinose (C)
-0.2
-1.0
N.D.
N.D.
-0.2
carbon source
Glycolic Acid (C)
-0.1
-1.0
N.D.
N.D.
-0.4
carbon source
L-Glutamic (C)
+0.0
-0.6
N.D.
N.D.
-0.9
carbon source
Glycolic Acid (C)
+0.0
-1.0
N.D.
N.D.
-0.5
carbon source
L-tyrosine (C)
+0.3
-0.6
N.D.
N.D.
-1.1
carbon source
Formate (C)
+0.2
-0.7
N.D.
N.D.
-0.8
carbon source
D-Glucose (C)
-0.4
+0.4
N.D.
N.D.
-1.3
carbon source
D-Arabinose (C)
-0.2
-1.5
N.D.
N.D.
+0.5
carbon source
L-Histidine (C)
+0.1
-1.4
N.D.
N.D.
+0.1
carbon source
D-Gluconic Acid (C)
-0.1
-1.3
N.D.
N.D.
+0.2
carbon source
2-Deoxy-D-Ribose (C)
+0.2
-0.7
N.D.
N.D.
-0.7
carbon source
butyrate (C)
+0.3
-0.6
N.D.
N.D.
-0.8
carbon source
L-Fucose (C)
+0.4
-0.6
N.D.
N.D.
-0.8
carbon source
Glucuronamide (C)
+0.5
-0.6
N.D.
N.D.
-0.7
carbon source
L-Histidine (C)
-0.1
-1.2
N.D.
N.D.
+0.6
carbon source
D-Gluconic Acid (C)
-0.3
-0.9
N.D.
N.D.
+0.5
carbon source
D-Glucuronic Acid (C)
-0.1
-0.4
N.D.
N.D.
+1.3
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