Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS24370 and ABID97_RS24375 are separated by 19 nucleotidesABID97_RS24375 and ABID97_RS24380 are separated by 107 nucleotidesABID97_RS24380 and ABID97_RS24385 are separated by 11 nucleotidesABID97_RS24385 and ABID97_RS24390 are separated by 78 nucleotides ABID97_RS24370: ABID97_RS24370 - DUF1841 family protein, at 5,044,745 to 5,045,179 _RS24370 ABID97_RS24375: ABID97_RS24375 - LysR substrate-binding domain-containing protein, at 5,045,199 to 5,046,194 _RS24375 ABID97_RS24380: ABID97_RS24380 - protocatechuate 3,4-dioxygenase subunit beta, at 5,046,302 to 5,047,027 _RS24380 ABID97_RS24385: ABID97_RS24385 - protocatechuate 3,4-dioxygenase subunit alpha, at 5,047,039 to 5,047,650 _RS24385 ABID97_RS24390: ABID97_RS24390 - c-type cytochrome, at 5,047,729 to 5,048,421 _RS24390
Group Condition ABID97_RS24370 ABID97_RS24375 ABID97_RS24380 ABID97_RS24385 ABID97_RS24390
carbon source 4-Hydroxybenzoic Acid (C) -2.9 -5.4 -6.5 -7.7 -1.2
carbon source 4-Hydroxybenzoic Acid (C) -3.2 -3.7 -4.0 -3.5 -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 +0.2 +0.0 +0.1 -2.6
carbon source casaminos (C) -3.1 -0.0 -0.1 -0.1 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 -0.1 +0.1 +0.1 -1.4
carbon source D-Glucuronic Acid (C) -1.1 -0.2 -0.1 -0.1 -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 +0.2 -0.0 -0.0 -2.1
plant outgrowth control Plant outgrowth control -2.6 -0.2 +0.1 +0.1 -0.5
carbon source L-Asparagine (C) -2.0 +0.0 -0.2 -0.2 -0.6
carbon source Fumarate (C) -1.9 -0.2 -0.0 -0.1 -0.8
carbon source succinate (C) -2.0 -0.1 +0.0 -0.1 -0.7
r2a outgrowth control R2A outgrowth control -1.5 -0.2 -0.0 -0.2 -0.9
carbon source D-Sorbitol (C) -1.7 +0.0 -0.1 -0.1 -0.8
carbon source L-Arabinose (C) -1.6 -0.2 -0.0 -0.1 -0.6
carbon source L-Lactate (C) -1.7 -0.0 +0.1 -0.0 -0.8
carbon source pyruvate (C) -2.1 -0.2 -0.1 +0.2 -0.2
carbon source Tween 20 (C) -1.7 -0.0 +0.0 -0.0 -0.7
r2a outgrowth control R2A outgrowth control -2.5 -0.1 +0.1 +0.1 +0.0
r2a outgrowth control R2A outgrowth control -1.6 -0.1 +0.1 +0.1 -0.7
carbon source D-Gluconic Acid (C) -1.6 -0.3 -0.2 +0.4 -0.5
carbon source a-Ketoglutaric (C) -1.6 +0.2 -0.2 +0.1 -0.5
carbon source L-Lactate (C) -1.2 -0.3 +0.2 +0.2 -0.8
carbon source L-tyrosine (C) -1.0 +0.2 -0.4 +0.1 -0.9
carbon source D-Fructose (C) +1.2 -0.2 +0.1 +0.2 -1.0
carbon source propionate (C) +1.1 -0.4 -0.2 +0.7 -0.2
carbon source L-Phenylalanine (C) +2.8 -0.2 +0.1 -0.1 -0.4
carbon source L-Phenylalanine (C) +3.0 -0.1 +0.1 +0.2 -0.4
phage V2_100 +4.0 -0.1 -0.3 -0.5 -0.1
carbon source butyrate (C) +1.6 +0.1 -0.1 +0.2 +2.2
carbon source butyrate (C) +2.0 +0.2 -0.1 +0.1 +2.3
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ABID97_RS24370
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ABID97_RS24375
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