Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS23665 and ABID97_RS23670 are separated by 93 nucleotidesABID97_RS23670 and ABID97_RS23675 are separated by 25 nucleotidesABID97_RS23675 and ABID97_RS23680 are separated by 25 nucleotidesABID97_RS23680 and ABID97_RS23685 are separated by 154 nucleotides ABID97_RS23665: ABID97_RS23665 - DNA-directed RNA polymerase subunit omega, at 4,901,336 to 4,901,539 _RS23665 ABID97_RS23670: ABID97_RS23670 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 4,901,633 to 4,903,888 _RS23670 ABID97_RS23675: ABID97_RS23675 - transcription elongation factor GreB, at 4,903,914 to 4,904,489 _RS23675 ABID97_RS23680: ABID97_RS23680 - hypothetical protein, at 4,904,515 to 4,904,961 _RS23680 ABID97_RS23685: ABID97_RS23685 - tRNA-Arg, at 4,905,116 to 4,905,192 _RS23685
Group Condition ABID97_RS23665 ABID97_RS23670 ABID97_RS23675 ABID97_RS23680 ABID97_RS23685
carbon source Tween 20 (C) -4.3 N.D. -0.1 -0.2 N.D.
carbon source D,L-Malic Acid (C) -4.4 N.D. +0.2 -0.0 N.D.
r2a outgrowth control R2A outgrowth control -3.6 N.D. +0.1 -0.2 N.D.
plant outgrowth control Plant outgrowth control -3.5 N.D. +0.0 -0.2 N.D.
carbon source Glycolic Acid (C) -2.3 N.D. -0.8 -0.2 N.D.
carbon source Gly-Glu (C) -3.2 N.D. +0.3 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.2 N.D. -0.4 +0.5 N.D.
plant outgrowth control Plant outgrowth control -3.0 N.D. +0.2 -0.1 N.D.
carbon source casaminos (C) -3.1 N.D. -0.1 +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 N.D. -0.0 -0.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -2.6 N.D. -0.0 +0.4 N.D.
carbon source Tween 20 (C) -2.5 N.D. +0.5 +0.2 N.D.
r2a outgrowth control R2A outgrowth control -1.9 N.D. +0.1 +0.2 N.D.
carbon source Glycolic Acid (C) -1.6 N.D. +0.2 +0.2 N.D.
carbon source D-Glucuronic Acid (C) -1.0 N.D. +0.5 -0.4 N.D.
phage V2_10 +2.0 N.D. -0.4 -0.0 N.D.
carbon source L-Proline (C) +1.6 N.D. +0.3 -0.1 N.D.
carbon source Formate (C) +1.9 N.D. +0.2 -0.4 N.D.
carbon source Glycerol (C) +1.9 N.D. +0.2 -0.3 N.D.
carbon source L-Histidine (C) +2.0 N.D. +0.3 -0.3 N.D.
carbon source D-Arabinose (C) +1.6 N.D. +0.2 +0.2 N.D.
carbon source a-Ketoglutaric (C) +1.7 N.D. +0.2 +0.2 N.D.
carbon source L-Phenylalanine (C) +1.6 N.D. +0.2 +0.3 N.D.
carbon source Ethanol (C) +1.6 N.D. +0.2 +0.3 N.D.
carbon source 2-Deoxy-D-Ribose (C) +1.4 N.D. +0.5 +0.3 N.D.
carbon source L-Alanine (C) +1.9 N.D. +0.3 -0.0 N.D.
carbon source L-tyrosine (C) +1.9 N.D. +0.1 +0.4 N.D.
carbon source L-Phenylalanine (C) +2.0 N.D. +0.4 +0.1 N.D.
carbon source L-Alanine (C) +2.1 N.D. +0.5 +0.2 N.D.
phage V2_100 +4.9 N.D. +0.1 +0.0 N.D.
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