Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS23580 and ABID97_RS23585 are separated by 42 nucleotidesABID97_RS23585 and ABID97_RS23590 overlap by 13 nucleotidesABID97_RS23590 and ABID97_RS23595 are separated by 40 nucleotidesABID97_RS23595 and ABID97_RS23600 are separated by 919 nucleotides ABID97_RS23580: ABID97_RS23580 - HU family DNA-binding protein, at 4,876,457 to 4,876,735 _RS23580 ABID97_RS23585: ABID97_RS23585 - efflux transporter outer membrane subunit, at 4,876,778 to 4,880,188 _RS23585 ABID97_RS23590: ABID97_RS23590 - hypothetical protein, at 4,880,176 to 4,881,507 _RS23590 ABID97_RS23595: ABID97_RS23595 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,881,548 to 4,882,849 _RS23595 ABID97_RS23600: ABID97_RS23600 - hypothetical protein, at 4,883,769 to 4,884,275 _RS23600
Group Condition ABID97_RS23580 ABID97_RS23585 ABID97_RS23590 ABID97_RS23595 ABID97_RS23600
carbon source L-Alanine (C) N.D. -0.1 -0.1 -0.6 -0.4
carbon source D,L-Malic Acid (C) N.D. +0.1 -0.1 -0.6 -0.5
carbon source L-Proline (C) N.D. +0.0 -0.1 -0.2 -0.8
carbon source L-Histidine (C) N.D. -0.2 -0.2 +0.2 -0.7
carbon source Glycerol (C) N.D. -0.0 -0.1 -0.2 -0.6
carbon source propionate (C) N.D. -0.1 -0.1 -0.5 -0.1
carbon source D-Xylose (C) N.D. -0.1 +0.1 -0.2 -0.5
carbon source L-Threonine (C) N.D. +0.0 -0.1 +0.0 -0.8
carbon source D-Ribose (C) N.D. -0.0 -0.3 -0.2 -0.3
carbon source D-Glucuronic Acid (C) N.D. -0.2 +0.1 -0.3 -0.3
carbon source L-tyrosine (C) N.D. -0.2 -0.3 -0.6 +0.4
carbon source L-Tryptophan (C) N.D. -0.0 -0.1 +0.1 -0.5
carbon source L-Alanine (C) N.D. -0.1 +0.1 -0.4 -0.2
carbon source D-Arabinose (C) N.D. -0.0 +0.0 -0.5 +0.2
r2a outgrowth control R2A outgrowth control N.D. -0.1 -0.0 -0.5 +0.2
carbon source a-Ketoglutaric (C) N.D. -0.1 -0.1 -0.4 +0.3
control NP N.D. +0.0 +0.1 +0.2 -0.5
carbon source butyrate (C) N.D. -0.1 -0.2 -0.3 +0.3
carbon source D-Mannose (C) N.D. -0.2 -0.2 +0.1 +0.2
carbon source pyruvate (C) N.D. +0.0 +0.2 -0.4 +0.2
phage V1_1 N.D. +0.1 +0.2 +0.1 -0.4
carbon source Formate (C) N.D. -0.0 -0.0 -0.3 +0.6
carbon source D-Serine (C) N.D. -0.1 -0.2 -0.2 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.1 -0.1 +0.2 +0.4
carbon source Formate (C) N.D. -0.1 -0.3 +0.2 +0.6
carbon source L-tyrosine (C) N.D. -0.0 +0.2 -0.1 +0.5
carbon source Glucuronamide (C) N.D. -0.0 -0.0 +0.1 +0.7
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.1 +0.1 -0.2 +0.7
carbon source casaminos (C) N.D. +0.1 +0.1 +0.5 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 +0.0 +0.6 +0.7
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