Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS23560 and ABID97_RS23565 are separated by 166 nucleotidesABID97_RS23565 and ABID97_RS23570 are separated by 94 nucleotidesABID97_RS23570 and ABID97_RS23575 are separated by 7 nucleotidesABID97_RS23575 and ABID97_RS23580 are separated by 316 nucleotides ABID97_RS23560: ABID97_RS23560 - pyridoxamine 5'-phosphate oxidase family protein, at 4,872,646 to 4,873,146 _RS23560 ABID97_RS23565: ABID97_RS23565 - universal stress protein, at 4,873,313 to 4,873,759 _RS23565 ABID97_RS23570: ABID97_RS23570 - AsmA family protein, at 4,873,854 to 4,875,875 _RS23570 ABID97_RS23575: ABID97_RS23575 - hypothetical protein, at 4,875,883 to 4,876,140 _RS23575 ABID97_RS23580: ABID97_RS23580 - HU family DNA-binding protein, at 4,876,457 to 4,876,735 _RS23580
Group Condition ABID97_RS23560 ABID97_RS23565 ABID97_RS23570 ABID97_RS23575 ABID97_RS23580
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.8 -0.8 N.D. N.D.
carbon source L-Alanine (C) -0.6 -0.6 -0.2 N.D. N.D.
carbon source L-Arabinose (C) -0.3 -0.4 -0.4 N.D. N.D.
carbon source D-Ribose (C) +0.1 -1.0 -0.2 N.D. N.D.
phage V1_1 -0.1 -0.7 -0.2 N.D. N.D.
carbon source Formate (C) +0.1 -0.9 -0.2 N.D. N.D.
carbon source Glycerol (C) -0.2 -0.2 -0.4 N.D. N.D.
carbon source a-Ketoglutaric (C) -0.3 -0.2 -0.4 N.D. N.D.
carbon source Ethanol (C) -0.1 -0.4 -0.2 N.D. N.D.
carbon source D-Galactose (C) +0.1 -0.4 -0.4 N.D. N.D.
carbon source D-Arabinose (C) -0.2 +0.2 -0.7 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.5 -0.5 N.D. N.D.
carbon source Tween 20 (C) -0.1 +0.1 -0.6 N.D. N.D.
carbon source L-Fucose (C) +0.1 -0.4 -0.4 N.D. N.D.
carbon source Glycolic Acid (C) -0.0 +0.2 -0.7 N.D. N.D.
carbon source L-Glutamine (C) +0.1 -0.2 -0.4 N.D. N.D.
carbon source L-Alanine (C) -0.5 -0.2 +0.2 N.D. N.D.
carbon source D-Glucose (C) +0.2 -0.1 -0.6 N.D. N.D.
carbon source butyrate (C) -0.1 -0.6 +0.3 N.D. N.D.
r2a outgrowth control R2A outgrowth control +0.1 -0.6 +0.2 N.D. N.D.
carbon source L-Histidine (C) +0.4 -0.6 +0.1 N.D. N.D.
carbon source L-tyrosine (C) -0.0 +0.5 -0.3 N.D. N.D.
carbon source L-Malic (C) +0.2 -0.4 +0.4 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.2 +0.7 -0.3 N.D. N.D.
carbon source butyrate (C) -0.0 +0.5 -0.3 N.D. N.D.
carbon source Fumarate (C) +0.4 -0.2 +0.3 N.D. N.D.
carbon source D-Sorbitol (C) +0.1 +0.5 -0.1 N.D. N.D.
carbon source D-Sorbitol (C) +0.2 +0.7 -0.2 N.D. N.D.
phage V2_100 +0.1 +1.5 -0.1 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 -0.6 +1.4 N.D. N.D.
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