Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS23550 and ABID97_RS23555 are separated by 18 nucleotidesABID97_RS23555 and ABID97_RS23560 are separated by 171 nucleotidesABID97_RS23560 and ABID97_RS23565 are separated by 166 nucleotidesABID97_RS23565 and ABID97_RS23570 are separated by 94 nucleotides ABID97_RS23550: ABID97_RS23550 - urease accessory UreF family protein, at 4,871,134 to 4,871,805 _RS23550 ABID97_RS23555: ABID97_RS23555 - urease accessory protein UreG, at 4,871,824 to 4,872,474 _RS23555 ABID97_RS23560: ABID97_RS23560 - pyridoxamine 5'-phosphate oxidase family protein, at 4,872,646 to 4,873,146 _RS23560 ABID97_RS23565: ABID97_RS23565 - universal stress protein, at 4,873,313 to 4,873,759 _RS23565 ABID97_RS23570: ABID97_RS23570 - AsmA family protein, at 4,873,854 to 4,875,875 _RS23570
Group Condition ABID97_RS23550 ABID97_RS23555 ABID97_RS23560 ABID97_RS23565 ABID97_RS23570
carbon source L-Arabinose (C) -0.5 -0.3 -0.3 -0.4 -0.4
carbon source L-Alanine (C) -0.4 -0.1 -0.6 -0.6 -0.2
carbon source L-Proline (C) -0.7 -0.1 -0.2 -0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.5 +0.1 -0.8 -0.8
carbon source butyrate (C) -0.6 -0.0 -0.1 -0.6 +0.3
carbon source Glucuronamide (C) -0.9 -0.1 -0.3 +0.4 -0.0
phage V1_1 +0.1 -0.2 -0.1 -0.7 -0.2
carbon source D-Ribose (C) +0.3 -0.0 +0.1 -1.0 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.0 +0.3 -0.5 -0.5
r2a outgrowth control R2A outgrowth control -0.4 -0.0 +0.1 -0.6 +0.2
carbon source Formate (C) +0.3 -0.0 +0.1 -0.9 -0.2
carbon source D-Arabinose (C) +0.2 +0.0 -0.2 +0.2 -0.7
carbon source L-Fucose (C) +0.3 -0.1 +0.1 -0.4 -0.4
carbon source D-Galactose (C) +0.5 -0.1 +0.1 -0.4 -0.4
carbon source Glycolic Acid (C) +0.4 -0.2 -0.0 +0.2 -0.7
carbon source Ethanol (C) +0.6 -0.0 -0.1 -0.4 -0.2
carbon source Tween 20 (C) +0.6 -0.0 -0.1 +0.1 -0.6
carbon source L-Alanine (C) +0.3 +0.1 -0.5 -0.2 +0.2
carbon source L-Fucose (C) +0.5 +0.2 -0.0 -0.4 -0.1
carbon source D-Glucose (C) +0.5 -0.3 -0.4 +0.3 -0.0
phage V2_10 +0.6 -0.3 +0.2 +0.1 -0.3
carbon source butyrate (C) +0.3 -0.2 -0.0 +0.5 -0.3
carbon source L-Histidine (C) +0.5 -0.1 +0.4 -0.6 +0.1
carbon source Gly-Glu (C) +0.6 -0.0 +0.2 -0.2 -0.2
carbon source L-tyrosine (C) +0.4 -0.1 -0.0 +0.5 -0.3
carbon source L-Malic (C) +0.4 -0.0 +0.2 -0.4 +0.4
carbon source 4-Hydroxybenzoic Acid (C) +0.5 +0.1 -0.2 +0.7 -0.3
carbon source Fumarate (C) +0.5 -0.0 +0.4 -0.2 +0.3
phage V2_100 +0.0 -0.2 +0.1 +1.5 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.0 +1.1 -0.6 +1.4
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