Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS23530 and ABID97_RS23535 are separated by 12 nucleotidesABID97_RS23535 and ABID97_RS23540 overlap by 4 nucleotidesABID97_RS23540 and ABID97_RS23545 are separated by 64 nucleotidesABID97_RS23545 and ABID97_RS23550 are separated by 35 nucleotides ABID97_RS23530: ABID97_RS23530 - urease subunit alpha, at 4,868,051 to 4,869,823 _RS23530 ABID97_RS23535: ABID97_RS23535 - type II toxin-antitoxin system death-on-curing family toxin, at 4,869,836 to 4,870,228 _RS23535 ABID97_RS23540: ABID97_RS23540 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 4,870,225 to 4,870,449 _RS23540 ABID97_RS23545: ABID97_RS23545 - urease accessory protein UreE, at 4,870,514 to 4,871,098 _RS23545 ABID97_RS23550: ABID97_RS23550 - urease accessory UreF family protein, at 4,871,134 to 4,871,805 _RS23550
Group Condition ABID97_RS23530 ABID97_RS23535 ABID97_RS23540 ABID97_RS23545 ABID97_RS23550
carbon source D-Mannose (C) -0.3 -0.5 N.D. -0.2 -0.2
carbon source L-Alanine (C) +0.2 +0.0 N.D. -0.7 -0.4
carbon source Glucuronamide (C) +0.4 -0.5 N.D. +0.1 -0.9
carbon source D,L-Malic Acid (C) -0.5 -0.4 N.D. -0.3 +0.3
carbon source butyrate (C) -0.2 -0.2 N.D. +0.2 -0.6
carbon source L-Histidine (C) +0.5 -0.0 N.D. -1.1 -0.1
carbon source propionate (C) +0.3 -0.4 N.D. +0.0 -0.4
carbon source butyrate (C) -0.3 +0.1 N.D. -0.5 +0.3
carbon source Ethanol (C) +0.5 -0.1 N.D. -0.6 -0.1
carbon source L-Phenylalanine (C) +0.4 -0.2 N.D. -0.8 +0.4
carbon source L-Phenylalanine (C) +0.5 -0.4 N.D. -0.4 +0.1
carbon source D-Gluconic Acid (C) +0.6 -0.2 N.D. -0.6 -0.1
carbon source L-Proline (C) +0.3 -0.3 N.D. +0.3 -0.4
carbon source L-Glutamic (C) +0.3 -0.2 N.D. -0.6 +0.5
carbon source L-Arabinose (C) +0.5 -0.0 N.D. +0.1 -0.5
carbon source L-Lactate (C) +0.4 +0.2 N.D. -0.6 +0.1
carbon source Formate (C) +0.2 +0.2 N.D. -0.4 +0.3
carbon source L-Threonine (C) +0.5 -0.1 N.D. -0.5 +0.3
carbon source Gly-Glu (C) +0.2 -0.2 N.D. -0.2 +0.6
carbon source L-tyrosine (C) +0.7 -0.5 N.D. +0.3 -0.1
carbon source acetate (C) +0.3 -0.1 N.D. -0.2 +0.5
carbon source Glycerol (C) +0.7 -0.3 N.D. +0.1 -0.1
carbon source Tween 20 (C) +0.6 +0.0 N.D. -0.6 +0.6
carbon source D-Galactose (C) +0.4 -0.5 N.D. +0.2 +0.5
carbon source D-Gluconic Acid (C) +0.4 -0.1 N.D. -0.3 +0.6
carbon source 4-Hydroxybenzoic Acid (C) +0.6 -0.1 N.D. +0.0 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.8 N.D. +0.4 -0.0
carbon source Ethanol (C) +0.3 +0.0 N.D. +0.3 +0.6
phage V2_10 +0.3 +0.1 N.D. +0.4 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +1.2 N.D. -0.2 +0.5
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ABID97_RS23530
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ABID97_RS23535
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ABID97_RS23545
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