Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS23355 and ABID97_RS23360 are separated by 76 nucleotidesABID97_RS23360 and ABID97_RS23365 overlap by 4 nucleotidesABID97_RS23365 and ABID97_RS23370 are separated by 29 nucleotidesABID97_RS23370 and ABID97_RS23375 are separated by 176 nucleotides ABID97_RS23355: ABID97_RS23355 - methionine adenosyltransferase, at 4,830,195 to 4,831,376 _RS23355 ABID97_RS23360: ABID97_RS23360 - hypothetical protein, at 4,831,453 to 4,831,632 _RS23360 ABID97_RS23365: ABID97_RS23365 - PepSY domain-containing protein, at 4,831,629 to 4,832,810 _RS23365 ABID97_RS23370: ABID97_RS23370 - TonB-dependent siderophore receptor, at 4,832,840 to 4,834,942 _RS23370 ABID97_RS23375: ABID97_RS23375 - phospholipase D family protein, at 4,835,119 to 4,836,723 _RS23375
Group Condition ABID97_RS23355 ABID97_RS23360 ABID97_RS23365 ABID97_RS23370 ABID97_RS23375
carbon source L-Alanine (C) N.D. -3.0 +0.2 +0.2 -0.1
carbon source propionate (C) N.D. -2.7 +0.4 -0.0 +0.1
carbon source L-Alanine (C) N.D. -2.9 +0.4 +0.2 +0.2
carbon source Formate (C) N.D. -1.8 +0.3 +0.1 +0.0
r2a outgrowth control R2A outgrowth control N.D. -1.6 +0.2 -0.0 +0.1
carbon source D-Ribose (C) N.D. -1.7 +0.2 +0.1 +0.2
carbon source butyrate (C) N.D. -1.6 +0.1 +0.1 +0.2
phage V2_1 N.D. -1.3 +0.1 +0.0 +0.0
carbon source L-Malic (C) N.D. -1.2 +0.1 +0.1 -0.1
carbon source L-Malic (C) N.D. -1.1 +0.2 +0.1 -0.1
carbon source propionate (C) N.D. -1.1 +0.2 +0.1 +0.1
carbon source Formate (C) N.D. -0.9 +0.3 +0.1 -0.1
carbon source Glucuronamide (C) N.D. -1.1 +0.2 +0.2 +0.1
carbon source Ethanol (C) N.D. -0.8 +0.1 +0.2 +0.1
carbon source acetate (C) N.D. -0.9 +0.3 +0.3 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.9 +0.4 +0.3 +0.2
carbon source L-tyrosine (C) N.D. -0.9 +0.6 +0.3 -0.0
phage V2_10 N.D. -0.6 +0.3 +0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 +0.2 +0.1 +0.4
carbon source D,L-Lactate (C) N.D. +0.5 +0.3 +0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.3 +0.2 +0.2 +0.4
carbon source Glycerol (C) N.D. +0.7 +0.2 +0.2 +0.1
carbon source butyrate (C) N.D. +1.2 +0.1 +0.0 -0.1
phage V2_100 N.D. +0.8 +0.3 +0.0 +0.2
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.6 +0.5 +0.4 +0.0
carbon source D-Xylose (C) N.D. +1.0 +0.3 +0.2 +0.1
carbon source D-Galactose (C) N.D. +1.4 +0.2 +0.2 +0.1
carbon source D,L-Malic Acid (C) N.D. +2.0 +0.1 +0.1 -0.1
carbon source L-Histidine (C) N.D. +1.1 +1.8 +1.1 -0.0
carbon source L-Histidine (C) N.D. +2.0 +1.8 +1.2 +0.0
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ABID97_RS23355
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ABID97_RS23360
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