Fitness for 5 genes in Variovorax sp. OAS795

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500 ntABID97_RS23300 and ABID97_RS23305 overlap by 4 nucleotidesABID97_RS23305 and ABID97_RS23310 are separated by 12 nucleotidesABID97_RS23310 and ABID97_RS23315 are separated by 28 nucleotidesABID97_RS23315 and ABID97_RS23320 are separated by 118 nucleotides ABID97_RS23300: ABID97_RS23300 - lipoprotein, at 4,818,711 to 4,818,980 _RS23300 ABID97_RS23305: ABID97_RS23305 - diaminopimelate decarboxylase, at 4,818,977 to 4,820,260 _RS23305 ABID97_RS23310: ABID97_RS23310 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 4,820,273 to 4,820,932 _RS23310 ABID97_RS23315: ABID97_RS23315 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 4,820,961 to 4,821,971 _RS23315 ABID97_RS23320: ABID97_RS23320 - c-type cytochrome biogenesis protein CcsB, at 4,822,090 to 4,823,406 _RS23320
Group Condition ABID97_RS23300 ABID97_RS23305 ABID97_RS23310 ABID97_RS23315 ABID97_RS23320
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.3 -0.2 -4.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.3 -0.1 -4.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.1 -0.1 -4.4
phage V1_1 N.D. N.D. -0.0 -0.0 -3.8
phage V1_1 N.D. N.D. +0.1 -0.0 -3.9
control NP N.D. N.D. -0.0 -0.0 -3.7
phage V2_1 N.D. N.D. +0.0 +0.0 -3.7
r2a outgrowth control R2A outgrowth control N.D. N.D. +0.0 +0.0 -3.7
phage V2_1 N.D. N.D. +0.0 +0.0 -3.6
carbon source casaminos (C) N.D. N.D. -0.1 -0.0 -3.4
carbon source Adenine (C) N.D. N.D. -0.0 +0.1 -3.5
carbon source Adenine (C) N.D. N.D. -0.1 +0.1 -3.3
carbon source Tween 20 (C) N.D. N.D. +0.1 -0.1 -3.1
plant outgrowth control Plant outgrowth control N.D. N.D. +0.0 +0.1 -3.2
r2a outgrowth control R2A outgrowth control N.D. N.D. -0.0 +0.2 -3.3
carbon source casaminos (C) N.D. N.D. -0.1 +0.0 -2.8
r2a outgrowth control R2A outgrowth control N.D. N.D. -0.0 +0.1 -2.9
plant outgrowth control Plant outgrowth control N.D. N.D. +0.0 +0.1 -2.8
carbon source Tween 20 (C) N.D. N.D. +0.1 +0.0 -2.4
carbon source L-Alanine (C) N.D. N.D. -0.2 -0.1 -2.0
carbon source D-Ribose (C) N.D. N.D. -0.1 -0.0 -2.1
r2a outgrowth control R2A outgrowth control N.D. N.D. +0.0 +0.2 -2.3
carbon source D-Arabinose (C) N.D. N.D. -0.1 +0.1 -1.6
phage V1_10 N.D. N.D. +0.2 +0.1 -1.8
phage V1_10 N.D. N.D. +0.2 +0.1 -1.8
phage V2_10 N.D. N.D. +0.1 -0.1 -1.6
carbon source D-Ribose (C) N.D. N.D. -0.0 +0.1 -1.6
carbon source Ethanol (C) N.D. N.D. +0.1 +0.2 -1.7
carbon source butyrate (C) N.D. N.D. -0.1 +0.3 +4.9
carbon source butyrate (C) N.D. N.D. +0.0 +0.7 +5.4
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ABID97_RS23300
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ABID97_RS23305
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