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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS23185 and ABID97_RS23190 are separated by 97 nucleotides
ABID97_RS23190 and ABID97_RS23195 are separated by 4 nucleotides
ABID97_RS23195 and ABID97_RS23200 are separated by 177 nucleotides
ABID97_RS23200 and ABID97_RS23205 are separated by 56 nucleotides
ABID97_RS23185: ABID97_RS23185 - ABC transporter ATP-binding protein, at 4,792,579 to 4,793,526
_RS23185
ABID97_RS23190: ABID97_RS23190 - STAS domain-containing protein, at 4,793,624 to 4,793,896
_RS23190
ABID97_RS23195: ABID97_RS23195 - ABC transporter substrate-binding protein, at 4,793,901 to 4,794,560
_RS23195
ABID97_RS23200: ABID97_RS23200 - VacJ family lipoprotein, at 4,794,738 to 4,795,424
_RS23200
ABID97_RS23205: ABID97_RS23205 - outer membrane lipid asymmetry maintenance protein MlaD, at 4,795,481 to 4,795,975
_RS23205
Group
Condition
ABID97
_RS23185
ABID97
_RS23190
ABID97
_RS23195
ABID97
_RS23200
ABID97
_RS23205
carbon source
Tween 20 (C)
-0.7
-2.0
-1.1
-0.6
-0.9
carbon source
Tween 20 (C)
-0.5
-1.1
-1.0
-0.7
-0.8
carbon source
D,L-Malic Acid (C)
+0.0
-0.7
-0.9
-0.9
-1.0
carbon source
4-Hydroxybenzoic Acid (C)
-1.1
-0.1
-0.4
-0.1
-0.6
plant outgrowth control
Plant outgrowth control
+0.3
-0.6
-0.6
-0.6
-0.6
plant outgrowth control
Plant outgrowth control
+0.4
-0.1
-0.7
-0.8
-0.4
carbon source
L-Histidine (C)
-2.1
-0.2
+0.5
+0.4
+0.1
phage
V2_100
-1.5
+0.4
+0.7
+0.1
+0.3
carbon source
casaminos (C)
-1.0
+0.2
+0.3
+0.5
+0.3
carbon source
D-Xylose (C)
-1.1
+0.5
+0.3
+0.6
+0.2
carbon source
casaminos (C)
-1.0
+0.3
+0.4
+0.5
+0.4
carbon source
L-Leucine (C)
-1.2
+0.7
+0.8
+0.4
+0.6
carbon source
L-tyrosine (C)
-0.4
+0.6
+0.3
+0.7
+0.2
carbon source
butyrate (C)
-0.7
+1.0
+0.5
+0.4
+0.7
carbon source
L-Threonine (C)
+0.4
+0.5
+0.5
+0.6
+0.4
r2a outgrowth control
R2A outgrowth control
+0.5
+0.7
+0.3
+0.5
+0.3
carbon source
Ethanol (C)
+0.0
+0.6
+0.6
+0.5
+0.6
carbon source
D-Gluconic Acid (C)
+0.2
+0.7
+0.4
+0.7
+0.4
carbon source
L-Proline (C)
-0.4
+0.7
+0.7
+0.7
+0.7
carbon source
L-Proline (C)
+0.1
+0.5
+0.6
+0.7
+0.4
carbon source
Glucuronamide (C)
+0.8
+0.6
+0.4
+0.4
+0.3
carbon source
D-Glucose (C)
-0.3
+0.4
+0.7
+0.7
+0.8
carbon source
L-Alanine (C)
-1.2
+1.4
+0.7
+0.4
+1.2
carbon source
D-Gluconic Acid (C)
+0.5
+0.4
+0.3
+0.9
+0.5
carbon source
Formate (C)
+0.4
+0.8
+0.4
+0.7
+0.6
carbon source
L-Tryptophan (C)
-0.0
+1.2
+0.6
+0.5
+0.6
carbon source
L-Tryptophan (C)
+0.3
+0.6
+0.7
+0.6
+0.6
carbon source
D-Glucose (C)
+0.1
+0.8
+0.8
+0.9
+0.8
carbon source
L-Alanine (C)
+0.6
+1.3
+0.7
+0.5
+0.7
carbon source
D-Glucuronic Acid (C)
+0.1
+1.3
+1.1
+1.3
+1.1
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