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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS23060 and ABID97_RS23065 are separated by 197 nucleotides
ABID97_RS23065 and ABID97_RS23070 are separated by 4 nucleotides
ABID97_RS23070 and ABID97_RS23075 are separated by 78 nucleotides
ABID97_RS23075 and ABID97_RS23080 are separated by 13 nucleotides
ABID97_RS23060: ABID97_RS23060 - Nif3-like dinuclear metal center hexameric protein, at 4,773,127 to 4,773,900
_RS23060
ABID97_RS23065: ABID97_RS23065 - trypsin-like peptidase domain-containing protein, at 4,774,098 to 4,775,258
_RS23065
ABID97_RS23070: ABID97_RS23070 - twin-arginine translocase subunit TatC, at 4,775,263 to 4,776,072
_RS23070
ABID97_RS23075: ABID97_RS23075 - Sec-independent protein translocase protein TatB, at 4,776,151 to 4,776,609
_RS23075
ABID97_RS23080: ABID97_RS23080 - Sec-independent protein translocase subunit TatA, at 4,776,623 to 4,776,871
_RS23080
Group
Condition
ABID97
_RS23060
ABID97
_RS23065
ABID97
_RS23070
ABID97
_RS23075
ABID97
_RS23080
plant outgrowth control
Plant outgrowth control
+0.4
-3.6
N.D.
N.D.
N.D.
plant outgrowth control
Plant outgrowth control
+0.5
-3.1
N.D.
N.D.
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.2
-2.3
N.D.
N.D.
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+0.5
-2.5
N.D.
N.D.
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
+1.0
-2.1
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
+1.5
-0.3
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+1.1
+0.7
N.D.
N.D.
N.D.
carbon source
Glycerol (C)
+1.2
+0.6
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
+1.1
+0.7
N.D.
N.D.
N.D.
carbon source
butyrate (C)
+1.3
+0.5
N.D.
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
+1.2
+0.6
N.D.
N.D.
N.D.
carbon source
L-Threonine (C)
+1.1
+0.7
N.D.
N.D.
N.D.
carbon source
L-Tryptophan (C)
+0.9
+0.9
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
+1.2
+0.7
N.D.
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+1.2
+0.6
N.D.
N.D.
N.D.
carbon source
casaminos (C)
+1.1
+0.7
N.D.
N.D.
N.D.
carbon source
succinate (C)
+1.0
+0.8
N.D.
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
+1.3
+0.6
N.D.
N.D.
N.D.
carbon source
casaminos (C)
+1.2
+0.7
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
+1.2
+0.7
N.D.
N.D.
N.D.
carbon source
D-Arabinose (C)
+1.3
+0.6
N.D.
N.D.
N.D.
carbon source
Fumarate (C)
+1.0
+0.9
N.D.
N.D.
N.D.
carbon source
D-Ribose (C)
+1.3
+0.7
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
+1.1
+0.9
N.D.
N.D.
N.D.
carbon source
D-Arabinose (C)
+1.4
+0.8
N.D.
N.D.
N.D.
carbon source
D-Ribose (C)
+1.3
+0.9
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
+1.3
+1.0
N.D.
N.D.
N.D.
carbon source
D-Fructose (C)
+1.3
+1.0
N.D.
N.D.
N.D.
carbon source
D-Fructose (C)
+1.3
+1.0
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
+1.3
+1.2
N.D.
N.D.
N.D.
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