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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS22985 and ABID97_RS22990 are separated by 253 nucleotides
ABID97_RS22990 and ABID97_RS22995 are separated by 105 nucleotides
ABID97_RS22995 and ABID97_RS23000 overlap by 4 nucleotides
ABID97_RS23000 and ABID97_RS23005 are separated by 67 nucleotides
ABID97_RS22985: ABID97_RS22985 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 4,755,673 to 4,756,287
_RS22985
ABID97_RS22990: ABID97_RS22990 - hypothetical protein, at 4,756,541 to 4,756,900
_RS22990
ABID97_RS22995: ABID97_RS22995 - YjbF family lipoprotein, at 4,757,006 to 4,757,626
_RS22995
ABID97_RS23000: ABID97_RS23000 - YjbH domain-containing protein, at 4,757,623 to 4,760,652
_RS23000
ABID97_RS23005: ABID97_RS23005 - hypothetical protein, at 4,760,720 to 4,761,946
_RS23005
Group
Condition
ABID97
_RS22985
ABID97
_RS22990
ABID97
_RS22995
ABID97
_RS23000
ABID97
_RS23005
carbon source
L-Alanine (C)
-2.6
+2.3
+1.5
+2.0
N.D.
carbon source
4-Hydroxybenzoic Acid (C)
-1.6
+1.8
+1.5
+1.9
N.D.
carbon source
Tween 20 (C)
-1.3
+2.0
+1.4
+1.7
N.D.
carbon source
Tween 20 (C)
-1.4
+2.0
+1.5
+1.7
N.D.
carbon source
L-Alanine (C)
-1.4
+2.1
+1.5
+2.1
N.D.
carbon source
L-Phenylalanine (C)
-0.7
+2.3
+1.6
+2.1
N.D.
carbon source
D-Fructose (C)
-1.3
+2.7
+1.6
+2.5
N.D.
carbon source
L-Histidine (C)
-0.4
+2.2
+1.6
+2.3
N.D.
carbon source
L-Phenylalanine (C)
-0.4
+2.1
+1.8
+2.3
N.D.
carbon source
D-Ribose (C)
-0.2
+2.4
+1.5
+2.1
N.D.
carbon source
L-Tryptophan (C)
+0.4
+2.3
+1.5
+2.0
N.D.
carbon source
L-Asparagine (C)
+0.4
+2.3
+1.5
+2.0
N.D.
carbon source
D-Glucose (C)
+1.2
+1.6
+1.5
+2.0
N.D.
carbon source
L-tyrosine (C)
+0.7
+2.1
+1.5
+2.1
N.D.
carbon source
D-Fructose (C)
-0.4
+2.4
+1.8
+2.6
N.D.
carbon source
D-Xylose (C)
+0.8
+2.1
+1.5
+2.1
N.D.
carbon source
L-Malic (C)
+1.7
+1.5
+1.5
+1.7
N.D.
carbon source
D-Gluconic Acid (C)
+1.1
+1.9
+1.5
+1.9
N.D.
carbon source
L-Glutamic (C)
+0.5
+2.1
+1.8
+2.1
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+0.2
+2.4
+1.6
+2.3
N.D.
carbon source
L-Threonine (C)
+1.0
+2.0
+1.5
+2.0
N.D.
carbon source
D,L-Malic Acid (C)
+1.0
+2.1
+1.5
+2.1
N.D.
carbon source
L-Arabinose (C)
+0.6
+2.4
+1.5
+2.2
N.D.
carbon source
Glycerol (C)
+1.2
+2.1
+1.4
+1.9
N.D.
carbon source
L-Arabinose (C)
+0.9
+2.1
+1.5
+2.2
N.D.
carbon source
D-Arabinose (C)
+0.9
+2.3
+1.6
+2.0
N.D.
carbon source
Glycerol (C)
+1.5
+2.0
+1.5
+2.0
N.D.
carbon source
D-Gluconic Acid (C)
+1.4
+2.3
+1.7
+2.0
N.D.
carbon source
butyrate (C)
+6.6
+1.6
+0.9
+1.2
N.D.
carbon source
butyrate (C)
+7.3
+1.3
+0.8
+1.3
N.D.
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