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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. OAS795
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABID97_RS22685 and ABID97_RS22690 are separated by 98 nucleotides
ABID97_RS22690 and ABID97_RS22695 are separated by 49 nucleotides
ABID97_RS22695 and ABID97_RS22700 are separated by 12 nucleotides
ABID97_RS22700 and ABID97_RS22705 are separated by 119 nucleotides
ABID97_RS22685: ABID97_RS22685 - tripartite tricarboxylate transporter substrate binding protein, at 4,699,489 to 4,700,463
_RS22685
ABID97_RS22690: ABID97_RS22690 - LysR family transcriptional regulator, at 4,700,562 to 4,701,488
_RS22690
ABID97_RS22695: ABID97_RS22695 - tripartite tricarboxylate transporter permease, at 4,701,538 to 4,703,052
_RS22695
ABID97_RS22700: ABID97_RS22700 - tripartite tricarboxylate transporter TctB family protein, at 4,703,065 to 4,703,553
_RS22700
ABID97_RS22705: ABID97_RS22705 - ATPase, T2SS/T4P/T4SS family, at 4,703,673 to 4,705,469
_RS22705
Group
Condition
ABID97
_RS22685
ABID97
_RS22690
ABID97
_RS22695
ABID97
_RS22700
ABID97
_RS22705
carbon source
D-Gluconic Acid (C)
-0.0
+0.0
-0.5
-0.2
-2.3
carbon source
L-Arabinose (C)
-0.7
+0.1
-0.3
-0.3
-1.6
carbon source
D-Gluconic Acid (C)
-0.0
+0.1
-0.4
-0.3
-2.1
carbon source
L-Glutamic (C)
+0.1
-0.6
-0.2
-0.2
-1.5
carbon source
L-Lactate (C)
-0.1
+0.1
-0.2
-0.3
-1.6
carbon source
Gly-Glu (C)
-0.2
+0.2
-0.3
-0.3
-1.5
carbon source
L-Glutamic (C)
+0.1
+0.2
-0.5
-0.3
-1.6
carbon source
Gly-Glu (C)
-0.1
+0.2
-0.3
-0.3
-1.6
carbon source
L-Arabinose (C)
-0.4
+0.4
-0.3
-0.1
-1.6
carbon source
D,L-Lactate (C)
-0.3
+0.4
-0.2
-0.4
-1.5
carbon source
butyrate (C)
+0.5
-0.4
+0.1
-0.1
-2.1
carbon source
L-Glutamine (C)
+0.0
+0.2
-0.2
-0.3
-1.6
carbon source
propionate (C)
-0.7
+0.4
-0.4
-0.2
-1.1
carbon source
L-Malic (C)
+0.0
+0.2
+0.2
-0.1
-2.0
carbon source
Glycerol (C)
+0.1
+0.3
-0.3
-0.1
-1.5
carbon source
Glucuronamide (C)
-0.3
+0.7
-0.1
-0.0
-1.7
carbon source
D-Ribose (C)
-0.1
+0.9
-0.3
-0.1
-1.4
carbon source
butyrate (C)
+0.4
+0.2
+0.0
-0.3
-1.5
carbon source
Glycerol (C)
-0.1
+0.7
-0.3
-0.1
-1.3
carbon source
L-tyrosine (C)
+0.0
+1.0
-0.5
-0.1
-1.4
carbon source
L-Alanine (C)
+0.4
+0.4
+0.2
+0.1
-1.6
carbon source
casaminos (C)
-0.0
+0.9
-0.1
+0.2
-1.5
carbon source
D,L-Malic Acid (C)
+0.5
+0.6
-0.1
-0.2
-1.4
phage
V1_10
-0.2
-0.2
-0.0
-0.1
+3.3
carbon source
a-Ketoglutaric (C)
+0.0
+0.1
+2.0
+1.7
-1.0
phage
V2_10
+0.1
-0.4
-0.0
-0.0
+3.4
phage
V1_10
-0.1
+0.0
-0.1
+0.1
+3.4
carbon source
a-Ketoglutaric (C)
+0.0
+0.6
+2.1
+1.6
-0.9
phage
V2_10
+0.2
+0.2
+0.2
+0.1
+3.4
phage
V2_100
+0.0
-0.2
+0.1
+0.0
+6.7
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